DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syx1A and psy1

DIOPT Version :9

Sequence 1:NP_001189276.1 Gene:Syx1A / 42854 FlyBaseID:FBgn0013343 Length:296 Species:Drosophila melanogaster
Sequence 2:NP_588053.1 Gene:psy1 / 2539377 PomBaseID:SPCC825.03c Length:284 Species:Schizosaccharomyces pombe


Alignment Length:259 Identity:75/259 - (28%)
Similarity:134/259 - (51%) Gaps:14/259 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 MDDFFAQVEEIRGMIDKVQDNVEEVKKKHSAILSAPQTDE----KTKQELEDLMADIKKNANRVR 93
            |.:||.:::.||..|.:::|||..::..|..  |..:.||    .|.:.||...:|.::....|:
pombe    18 MGEFFEEIDHIRDAIRQIEDNVGRIEMLHQQ--SLQEIDEANIAATTRHLEGYTSDTRRLQTSVQ 80

  Fly    94 GKLKGIEQNIEQEEQQNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKGRIQRQLEI 158
            ..::    ::|.:..|.....|...||||...:.:||::.:..:.:.:..||.:.:.|::|||||
pombe    81 LAIR----SLESQNMQLPPDNDTATRKTQTEAVKKKFMDQIRHFLQIEKTYRAQYEQRMRRQLEI 141

  Fly   159 TG-RPTNDDELEKMLEEGNSSVFTQGIIMETQ--QAKQTLADIEARHQDIMKLETSIKELHDMFM 220
            .. |.|.||....:.||....||.|.::...:  :|:..|.:::.||.||.::|.:|.||..:|.
pombe   142 ANPRATEDDFQTAINEENGGQVFAQALLRSNRSGEARTALREVQERHADIKRIERTIAELAQLFQ 206

  Fly   221 DMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQSKARRKK-IMILICLTVLGILAA 283
            |||.:|:.|..|:|:|.....:....:...||...:|:|....||:|| |...||:.::.::.|
pombe   207 DMATMVQEQEPMVDKIVTDAVNVRTNMGEGTQHMDRAIKSARAARKKKWICFGICVVIICVIVA 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syx1ANP_001189276.1 Syntaxin 33..230 CDD:395647 59/203 (29%)
SNARE 231..281 CDD:399038 14/50 (28%)
psy1NP_588053.1 COG5074 1..284 CDD:227406 75/259 (29%)
SynN 18..167 CDD:238105 43/154 (28%)
SNARE_Sso1 181..244 CDD:277202 20/62 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 97 1.000 Domainoid score I1890
eggNOG 1 0.900 - - E1_COG5074
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H37941
Inparanoid 1 1.050 118 1.000 Inparanoid score I1521
OMA 1 1.010 - - QHG53912
OrthoFinder 1 1.000 - - FOG0000185
OrthoInspector 1 1.000 - - oto100518
orthoMCL 1 0.900 - - OOG6_100497
Panther 1 1.100 - - O PTHR19957
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1024
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.900

Return to query results.
Submit another query.