DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syx1A and Stx1b

DIOPT Version :10

Sequence 1:NP_001189276.1 Gene:Syx1A / 42854 FlyBaseID:FBgn0013343 Length:296 Species:Drosophila melanogaster
Sequence 2:XP_063137139.1 Gene:Stx1b / 24923 RGDID:3784 Length:295 Species:Rattus norvegicus


Alignment Length:265 Identity:188/265 - (70%)
Similarity:221/265 - (83%) Gaps:5/265 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KDRLAALHAAQ-SDDEEETEVAVNVDGHDSYMDDFFAQVEEIRGMIDKVQDNVEEVKKKHSAILS 66
            |||...|.:|: ||||||   .|:|| .|.:||:||.|||||||.|:|:.::||:|||:|||||:
  Rat     2 KDRTQELRSAKDSDDEEE---VVHVD-RDHFMDEFFEQVEEIRGCIEKLSEDVEQVKKQHSAILA 62

  Fly    67 APQTDEKTKQELEDLMADIKKNANRVRGKLKGIEQNIEQEEQQNKSSADLRIRKTQHSTLSRKFV 131
            ||..|||||||||||.|||||.||:||.|||.|||:|||||..|:||||||||||||||||||||
  Rat    63 APNPDEKTKQELEDLTADIKKTANKVRSKLKAIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFV 127

  Fly   132 EVMTEYNRTQTDYRERCKGRIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAKQTLA 196
            |||||||.||:.||:|||.|||||||||||.|.::|||.|||.|..::||..|.|::|..||.|.
  Rat   128 EVMTEYNATQSKYRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLAIFTDDIKMDSQMTKQALN 192

  Fly   197 DIEARHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQ 261
            :||.||.:|:||||||:||||||:||||||||||||||||||:|||::|||:.|..|||||:|||
  Rat   193 EIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQ 257

  Fly   262 SKARR 266
            |||||
  Rat   258 SKARR 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syx1ANP_001189276.1 Syntaxin 35..230 CDD:459942 141/194 (73%)
SNARE 231..281 CDD:461727 28/36 (78%)
Stx1bXP_063137139.1 None

Return to query results.
Submit another query.