| Sequence 1: | NP_651211.2 | Gene: | SMC1 / 42853 | FlyBaseID: | FBgn0040283 | Length: | 1238 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001190492.1 | Gene: | SMC3 / 834917 | AraportID: | AT5G48600 | Length: | 1244 | Species: | Arabidopsis thaliana |
| Alignment Length: | 1339 | Identity: | 317/1339 - (23%) |
|---|---|---|---|
| Similarity: | 611/1339 - (45%) | Gaps: | 247/1339 - (18%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 3 EEDDDVAQRVATAPVRKPDDETAFLEYIEMENFKSYRGHIVVGPL-KQFNAVIGPNGSGKSNFMD 66
Fly 67 AISFVMGEKTSSLRVKRLNDLIHGSSIGKPVSRSCYVTAKF--VLNEERHM-------DF---QR 119
Fly 120 AVIGGSSEYRINGESVSSSTYLNKLEKIGINVKAKNFLVFQGAVENIAMKTPKER-------TAL 177
Fly 178 FEEISGSGLLKDDYNRLKQEMIVAEEETQFTYQKKKGIAAERKEAKHEKMEADRY---------- 232
Fly 233 ----TRLQNEYNEKQVEYQLFRLFHVERDIRKFTSDLEVRQQEVKAVE-------QRKEAADEIL 286
Fly 287 REKKKDAGKITRDLAKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLISLQKTLE-------- 343
Fly 344 -TAREADNAH-----QSDIRKLEKQLADVEALKKRFED-----EIENESQR------RGKSVNME 391
Fly 392 EGLVQEYDRL---KQEAEATATQYRSELDSVNREQKSEQDTLDGETNRRASVEESFK-KLTLQRE 452
Fly 453 EAVKRRDKLMDHIKSSQAALEEQNRIKDELRRDVGTSKEKIAEKQRELEDVRDQLGDAKSDKHED 517
Fly 518 ARRKKKQEVVELF-----KKQVPGVYDRMINMCQPTHKRYNVAV-TKVLGKFMEAIIVDTEKTAR 576
Fly 577 HCIQILKEQMLEVETFLPLDYL--QVKPLKERLRNISDPRNVRLVFDVLKFEPQEIERAVLFATG 639
Fly 640 NALVCETPEDAMKVAYEIDRSRFDALALDGTFYQKSGLISGG--------------SHDLARKAK 690
Fly 691 RWDEKHMAQLKMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKKSISQY 755
Fly 756 DNQLQQV----QSQLDEFGPKILEIERRMQNREEHIQEIKENMNNVEDKVYASFCRRLGVK-NIR 815
Fly 816 QYEERELVMQQERARKRAEFEQQIDSINSQLD-FEKQKDT-KKNVERWERSVQD---EEDALEGL 875
Fly 876 KLAEARYLKEIDEDK-EKMEKFKQDKQAKKQAVDDMEEDISKARKDVANLAKEIHNVGSHLSAVE 939
Fly 940 SKIEAKKNERQNILLQAKTDCIVVPLLRGSLDDA-------VRQSDPDVPSTSAAMENIIEVDYS 997
Fly 998 SLPREYTKLKDDSAFKKTHEMLQ------KDLQSKLDVL----ERIQTPNMKALQKLDAVTEKVQ 1052
Fly 1053 STNEEFENARKKAKRAKAAFERVKNERSSRFVACCQHISDAIDGIYKKLARNEAAQAYIGPD--- 1114
Fly 1115 ---NPEEPYLDGINYNCVAPGKRFQPMNNLSGGEKTIAALALLFSTHSFHPAPFFVLDEIDAALD 1176
Fly 1177 NTNIGKVASYIRDHTTNLQTIVISLKEEFYGHADALVGI 1215 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| SMC1 | NP_651211.2 | Smc | 26..1216 | CDD:224117 | 312/1316 (24%) |
| ABC_SMC1_euk | 27..>171 | CDD:213242 | 56/156 (36%) | ||
| SMC_hinge | 535..653 | CDD:214944 | 32/120 (27%) | ||
| DUF4700 | <697..>810 | CDD:292399 | 21/116 (18%) | ||
| ABC_SMC1_euk | <1130..1232 | CDD:213242 | 42/86 (49%) | ||
| SMC3 | NP_001190492.1 | Smc | 24..1232 | CDD:224117 | 312/1317 (24%) |
| ABC_SMC4_euk | 24..>184 | CDD:213241 | 57/160 (36%) | ||
| Csx12 | 241..>380 | CDD:277695 | 32/159 (20%) | ||
| SMC_hinge | 555..670 | CDD:214944 | 32/120 (27%) | ||
| TBPIP | <754..831 | CDD:284512 | 17/84 (20%) | ||
| ABC_SMC4_euk | <1135..1229 | CDD:213241 | 42/85 (49%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_COG1196 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 1 | 1.010 | - | - | D326079at2759 | |
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 3 | 2.820 | |||||