DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMC1 and si:dkey-119f1.1

DIOPT Version :9

Sequence 1:NP_651211.2 Gene:SMC1 / 42853 FlyBaseID:FBgn0040283 Length:1238 Species:Drosophila melanogaster
Sequence 2:NP_001121806.1 Gene:si:dkey-119f1.1 / 557127 ZFINID:ZDB-GENE-070705-287 Length:1090 Species:Danio rerio


Alignment Length:1296 Identity:260/1296 - (20%)
Similarity:460/1296 - (35%) Gaps:407/1296 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TEED---------DDVAQRVATAPVRKPDDETAFLEYIEMENFKSYRGHIVVGPL---KQFNAVI 54
            ||||         |.::|..:..      .|...:|.|.:.||..   |.::||.   ...|.|:
Zfish    24 TEEDGEPIYFSAGDGLSQSQSVT------GEVGIIESISLRNFMC---HSLLGPFAFGPNVNFVV 79

  Fly    55 GPNGSGKSNFMDAISFVMGEKT-SSLRVKRLNDLIHGSSIGKPVS-------RSCYVTAKFVLNE 111
            |.||||||..:.|:...:|.|. ::.|...|...:........||       |..|...||    
Zfish    80 GNNGSGKSAVLTALIVALGGKALTTNRGSSLKGFVKEGESSADVSITLRNRGRDAYKPEKF---- 140

  Fly   112 ERHMDFQRAVIGGSS---EYRINGESVSSSTYLNKLEK-IGINVKA-KNFLV-----FQGAVENI 166
                        |.|   :.||:.|.:  .||  ||:. .|..|.| |..||     |...|:|.
Zfish   141 ------------GQSIVVDLRISSEGI--RTY--KLKSHTGQLVSAKKEELVSILDHFNIQVDNP 189

  Fly   167 AMKTPKERTALFEEISGSG-------------LLKDDYNRLKQEMIVAEEETQFTYQKKKGIAAE 218
            .....:|.:..|....|.|             .:|:||:.:.:...:    ||.|.:|.:....|
Zfish   190 VSILTQEMSKHFLHSKGEGDKYKFFMKATQLDQMKEDYSYIMKTKTL----TQNTVEKHRETLLE 250

  Fly   219 RKEAKHEKMEADRYTRL------QNEYNE--KQVEYQLFRLFHVERDIRKFTSDLEVRQQEVKAV 275
            .|:...:|.|  ||..|      |.:.||  .|:.:.|         :.:...:::..::::.|.
Zfish   251 LKQKFRDKEE--RYKSLASLDEMQQKLNELKNQMAWAL---------VAEMEQEMKPMKEQITAE 304

  Fly   276 EQRKEAADEILRE---KKKDAGKITRDLAKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLIS 337
            |:.....|:.:.|   |..:|.||::.|   ..::.....:|.:.:|       :.:..|.::..
Zfish   305 ERSTVKYDQKVEEWKGKVDEANKISKQL---QDQLESVSERMQQLQP-------ECSELKSRVQE 359

  Fly   338 LQKTLETAREADNAHQSDIRKLEKQLADVEALKKRFEDEIEN--------ESQRRGKSVN----- 389
            ..:.|:||..|.:..::::|.|||   |.:.|.||.: |:::        ::|.|.:.:|     
Zfish   360 RNRELKTAEAALHRKRTNLRDLEK---DKDQLNKRIK-ELKHSISQMNSADTQARVEKMNHIQAE 420

  Fly   390 MEE------GLVQEYDRLKQEAEATATQYRSELDSVNREQKSEQDTLDGETNRRASVEESFKKLT 448
            :||      .|.|:.|:.||..|:...::.    .::||::..|..:|.:....|::|.|     
Zfish   421 LEELSFRDSTLAQQIDQFKQACESAKERHA----RMSRERQDLQRAIDSKQRDLAAMESS----- 476

  Fly   449 LQREEAVKRRDKLMDHIKSSQAALEEQN-----------------RIKDELRRDVGTSKEKIAE- 495
              |...::|   ..:||.:...|::|.:                 |::|:   |:..:.|...: 
Zfish   477 --RNNQLRR---FGEHIPALMEAIDEAHHRGKFRMKPVGPLGFCIRLRDQ---DLALAVECCLKA 533

  Fly   496 -----------KQRELEDVRDQLGDAKSDKHEDARRKKKQEVVELFKKQVPGVYDRMINMCQPTH 549
                       .:||||.:..:...         |.::.|.:|..|...:..|.:|.:     :|
Zfish   534 LMLAFCCDNHADERELERIMGRFYQ---------RGRRPQIIVSRFTNMLYNVGNRAV-----SH 584

  Fly   550 KRYNVAVTKVLGKFMEAIIVDTEKTARHCIQILKEQMLEVETFLPLDYLQVKPLKERLRNISD-- 612
            ..|...        ::|:.::....|...|     .|..:||.     |.:|..::..|.:..  
Zfish   585 PDYPTV--------LQALDIENPVVANCLI-----DMRGIETI-----LLIKDNRDARRVMQSKG 631

  Fly   613 ---PRNVRLVFD-------VLKFEPQEIERAVLFATGNALVCETPEDA--MKVAYEIDRSRFDAL 665
               |||.|..|.       ..::...|..||      ..|..:..|:.  ::.|.:..|::.|..
Zfish   632 GQAPRNCREAFTRDGDQVYTNRYYSSEQHRA------QYLSRDVEEEIRHLQSALQTQRAQLDRF 690

  Fly   666 ALDGTFYQKSGLISGGSHDLARKAKRWDEKHMAQLKMQKERLQEELKELVKKSRKQSE-LATVES 729
            ..|   .|:.|.....:..|.|:|  :|::...|.:.:|  ||.||.||......||| |..:|.
Zfish   691 QQD---MQQVGEEERQNQTLLRRA--YDDRKKVQERSRK--LQAELTELQNVEEPQSEDLKPLEE 748

  Fly   730 QIKGLENRLKYSMVDLESSKKSISQYDNQLQQVQSQLDEFGPKILEIERRMQNREEHIQEIKENM 794
            :::.|..|:.....:.|:.::       |.|..:.:.:|......:.:..:.:..|.::.|||.:
Zfish   749 ELEELSGRISVCGEEFEALRR-------QTQTCKKEYEEAEKVFRQKKEAVNSIVEEVEPIKERL 806

  Fly   795 NNVEDKVYASFCRRLGVKNIRQYEERELVMQQERARKRAEFEQQIDSINSQLDFEKQKDTKKNVE 859
            ||.:.:|..|...|      :.|||           ||....|.|:::.:.|:            
Zfish   807 NNSDQEVERSKHHR------KHYEE-----------KRKTHLQMIETLKTSLN------------ 842

  Fly   860 RWERSVQDEEDALEGLKLAEARYLKEIDEDKEKMEKFKQDKQAKKQAVDDMEEDISKARKDVANL 924
                                                   .|:.:.||......:|...|.||...
Zfish   843 ---------------------------------------QKEQELQAAIAKASEICPERSDVRRT 868

  Fly   925 AKEIHNVGSHLSAVESKIEAKKNERQNILLQAKTDCIVVPLLRGSLDDAVRQSDPDVPSTSAAME 989
            ||   ::.|.::.::|||..::::      |...|.||                           
Zfish   869 AK---SLDSEINRLKSKINTQQDQ------QGHRDTIV--------------------------- 897

  Fly   990 NIIEVDYSSLPREYTKLKDDSAFKKTHEMLQKDLQSKLDVLERIQTPNMKALQKLDAVTEKVQST 1054
                       |||.:.::  .|.|....: |.|.:.:..|.:|.|..                .
Zfish   898 -----------REYHEARE--KFGKISRQV-KGLDAFIHQLSKIMTTR----------------H 932

  Fly  1055 NEEFENARKKAKRAKAAFERVKNERSSRFVACCQHISDAIDGIYKKLARNEAAQAYIGPDNPEEP 1119
            |...|.....:.|.|..|..:.::|..:......|             :||.....:.|.     
Zfish   933 NVYAEMRMYLSVRCKYNFHSMLSQRGYKGKMIFDH-------------KNEILSISVQPG----- 979

  Fly  1120 YLDGINYNCVAPGKR-FQPMNNLSGGEKTIAALALLFSTHSFHPAPFFVLDEIDAALDNTN 1179
              :|        ||. ...|.:|||||::.:.:..:.|.......||..|||.|..:|..|
Zfish   980 --EG--------GKADLSDMRSLSGGERSFSTVCFVLSLWEIAEVPFRALDEFDVYMDMVN 1030

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC1NP_651211.2 Smc 26..1216 CDD:224117 253/1263 (20%)
ABC_SMC1_euk 27..>171 CDD:213242 45/164 (27%)
SMC_hinge 535..653 CDD:214944 23/131 (18%)
DUF4700 <697..>810 CDD:292399 28/113 (25%)
ABC_SMC1_euk <1130..1232 CDD:213242 17/51 (33%)
si:dkey-119f1.1NP_001121806.1 Smc 52..1074 CDD:224117 253/1262 (20%)
ABC_SMC6_euk 52..>208 CDD:213243 48/178 (27%)
TBPIP <241..319 CDD:284512 17/88 (19%)
Laminin_II 319..>396 CDD:283628 21/90 (23%)
ABC_SMC6_euk <982..1077 CDD:213243 17/49 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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