DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SMC1 and smc1al

DIOPT Version :9

Sequence 1:NP_651211.2 Gene:SMC1 / 42853 FlyBaseID:FBgn0040283 Length:1238 Species:Drosophila melanogaster
Sequence 2:NP_997975.2 Gene:smc1al / 403060 ZFINID:ZDB-GENE-040426-57 Length:1233 Species:Danio rerio


Alignment Length:1228 Identity:599/1228 - (48%)
Similarity:856/1228 - (69%) Gaps:20/1228 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 FLEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLNDLIHG 90
            :|:.||:||||||:|..::||..:|.|:||||||||||.|||||||:.||||:||||.|.|||||
Zfish     3 YLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKTLKDLIHG 67

  Fly    91 SSIGKPVSRSCYVTAKFVLNEERHMDFQRAVIGGSSEYRINGESVSSSTYLNKLEKIGINVKAKN 155
            :.:|||.:...:||..:..:..:.:.|.|.:||.|||||||.:.|..|.|..:|||:||.:||:|
Zfish    68 APVGKPAANRAFVTMVYQQDGGQELSFSRIIIGSSSEYRINNKVVGLSDYSEELEKLGILIKARN 132

  Fly   156 FLVFQGAVENIAMKTPKERTALFEEISGSGLLKDDYNRLKQEMIVAEEETQFTYQKKKGIAAERK 220
            |||||||||:||||.||||||||||||.||.|..:|:|.|:||:.|||:|||.|.:||.||||||
Zfish   133 FLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDRCKKEMVKAEEDTQFNYHRKKNIAAERK 197

  Fly   221 EAKHEKMEADRYTRLQNEYNEKQVEYQLFRLFHVERDIRKFTSDLEVRQQEVKAVEQRKEAADEI 285
            |||.||.||:||.||::|.....|:.|||:|:|.|.:|.|...:|..|.:|:....:|.:..:|.
Zfish   198 EAKQEKEEAERYQRLKDEVVRAHVQLQLFKLYHNESEIEKLNRELAHRNKEIDKDRKRMDRVEEE 262

  Fly   286 LREKKKDAGKITRDLAKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLISLQKTLETAREADN 350
            |::|||:.|::.||...|::||:|.:.::|::|||||||||...|..|||.:.:|:|:.|::...
Zfish   263 LKDKKKELGRMMRDQQMIEKEIKEKDAELNQKRPLYIKAKENTAHKIKKLEAARKSLQNAQKCYK 327

  Fly   351 AHQSDIRKLEKQLADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDRLKQEAEATATQYRSE 415
            ..:.|:.:|:::...||..::.||:.:|.|:|.:|:.:.:||..|:.|.|||:||...|.....|
Zfish   328 KRKGDMDELDREQGAVEMARQEFEERMEEEAQSQGQDLQLEENQVKAYHRLKEEASKRAATLAQE 392

  Fly   416 LDSVNREQKSEQDTLDGETNRRASVEESFKKLTLQREEAVKRRDKLMDHIKSSQAALEEQNRIKD 480
            |:..||:||::||.||.|..::...|...|:...:.||..||.:||.|:|.:|:.:|:||.|:::
Zfish   393 LEKFNRDQKADQDRLDLEERKKIETEAKIKQKIREIEENQKRIEKLEDYITTSRQSLDEQKRMEE 457

  Fly   481 ELRRDVGTSKEKIAEKQRELEDVRDQLGDAKSDKHEDARRKKKQEVVELFKKQVPG-VYDRMINM 544
            ||..:|..:|.:|.|...||..|.:|||||:.|:.|::|:::|.|::|..|:..|| ||.|:|::
Zfish   458 ELTEEVEQAKRRIDEINMELNQVMEQLGDARIDRQENSRQQRKAEILESIKRLYPGSVYGRLIDL 522

  Fly   545 CQPTHKRYNVAVTKVLGKFMEAIIVDTEKTARHCIQILKEQMLEVETFLPLDYLQVKPLKERLRN 609
            ||||.|:|.:||||||||.|:|||||:|||.|.|||.:|||..|.|||||||||:|||..|:||.
Zfish   523 CQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRE 587

  Fly   610 ISDPRNVRLVFDVLKFEPQEIERAVLFATGNALVCETPEDAMKVAYEIDRSRFDALALDGTFYQK 674
            :   |..:||.||:::||.:|::|:.:|.||||||:..|||.::|:. ...|...:|||||.:||
Zfish   588 L---RGAKLVIDVIRYEPPQIKKALQYACGNALVCDNVEDARRIAFG-GPYRHKTVALDGTLFQK 648

  Fly   675 SGLISGGSHDLARKAKRWDEKHMAQLKMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLK 739
            ||:||||:.||..||:|||||.:.:||.:||:|.:||||.:|..||::||..|:||..||:.|||
Zfish   649 SGVISGGASDLKAKARRWDEKAVDKLKDRKEKLTDELKEQMKAKRKEAELRQVQSQAHGLQMRLK 713

  Fly   740 YSMVDLESSK-KSISQYDNQLQQVQSQLDEFGPKILEIERRMQNREEHIQEIKENMNNVEDKVYA 803
            ||..|||.:| :.:|....:..:::|:|..|||:|.:|:|.:|:||..::::|:.||.|||:|:.
Zfish   714 YSQSDLEQTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIQSRERDMKDLKDRMNVVEDEVFV 778

  Fly   804 SFCRRLGVKNIRQYEERELVMQQERARKRAEFEQQIDSINSQLDFEKQ--KDTKKNVERWERSVQ 866
            .||:.:||:|||::||.::..|.|.|:||.|||.|...:..|||:||.  |:.::.|..||::|:
Zfish   779 EFCKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLAIQLDYEKNQLKEDQEKVVMWEQTVK 843

  Fly   867 DEEDALEGLKLAEARYLKEIDEDKEKMEKFKQDKQAKKQAVDDMEEDISKARKDVANLAKEIHNV 931
            .:|:.:|.||..|.|.:|.|||...:::..|.....||..|:|...::.:.||.:....||:..:
Zfish   844 KDENEIEKLKKEEQRNMKIIDETMAQLQDLKNQHLTKKSEVNDKNHEMEEIRKKLGGANKELTQL 908

  Fly   932 GSHLSAVESKIEAKKNERQNILLQAKTDCIVVPLLRGSLDDAVRQ-----------SDPDVPSTS 985
            ...::|:|:|:|.|:::|.|:|...|...|.:||..|::||..::           |.....||.
Zfish   909 QKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLRSGTMDDISQEEGNSQAEESLSSSQKTSSTV 973

  Fly   986 AAMENIIEVDYSSLPREYTKLKDDSAFKKTHEMLQKDLQSKLDVLERIQTPNMKALQKLDAVTEK 1050
            .|.|.:||:||:||..:......|...|.....||:.|..:..:|:||..|||||::||::|.:|
Zfish   974 LAKEALIEIDYNSLSEDLKDSLSDEEIKAEMNTLQQRLNEQQSILQRISAPNMKAMEKLESVRDK 1038

  Fly  1051 VQSTNEEFENARKKAKRAKAAFERVKNERSSRFVACCQHISDAIDGIYKKLARNEAAQAYIGPDN 1115
            .|.|::|||.|||:||:||.|||::|.||..||.||.:.::..||.|||.|:||.:|||::||:|
Zfish  1039 FQETSDEFEAARKRAKKAKQAFEQIKKERFDRFHACFESVATNIDEIYKALSRNSSAQAFLGPEN 1103

  Fly  1116 PEEPYLDGINYNCVAPGKRFQPMNNLSGGEKTIAALALLFSTHSFHPAPFFVLDEIDAALDNTNI 1180
            ||||||||||||||||||||:||:||||||||:|||||||:.||:.|||||||||||||||||||
Zfish  1104 PEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNI 1168

  Fly  1181 GKVASYIRDHTT-NLQTIVISLKEEFYGHADALVGITPGEGDCLVSNVYIMDLTTFED 1237
            ||||:||:|.:. |.|.||||||||||..||:|:|:.|.:|||::|.|...||:.:.|
Zfish  1169 GKVANYIKDQSVQNFQAIVISLKEEFYTKADSLIGVYPEQGDCVISKVLTFDLSQYAD 1226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC1NP_651211.2 Smc 26..1216 CDD:224117 590/1205 (49%)
ABC_SMC1_euk 27..>171 CDD:213242 85/143 (59%)
SMC_hinge 535..653 CDD:214944 71/118 (60%)
DUF4700 <697..>810 CDD:292399 49/113 (43%)
ABC_SMC1_euk <1130..1232 CDD:213242 73/102 (72%)
smc1alNP_997975.2 SMC_N 3..1209 CDD:280601 591/1209 (49%)
ABC_SMC1_euk 4..>148 CDD:213242 85/143 (59%)
SMC_hinge 513..628 CDD:214944 70/117 (60%)
ABC_SMC1_euk <1118..1221 CDD:213242 73/102 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4597
Inparanoid 1 1.050 1165 1.000 Inparanoid score I195
OMA 1 1.010 - - QHG53603
OrthoDB 1 1.010 - - D326079at2759
OrthoFinder 1 1.000 - - FOG0001963
OrthoInspector 1 1.000 - - otm24814
orthoMCL 1 0.900 - - OOG6_101499
Panther 1 1.100 - - O PTHR18937
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1351
SonicParanoid 1 1.000 - - X1284
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.870

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