DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SMC1 and glu

DIOPT Version :9

Sequence 1:NP_651211.2 Gene:SMC1 / 42853 FlyBaseID:FBgn0040283 Length:1238 Species:Drosophila melanogaster
Sequence 2:NP_723996.1 Gene:glu / 35001 FlyBaseID:FBgn0015391 Length:1409 Species:Drosophila melanogaster


Alignment Length:1271 Identity:336/1271 - (26%)
Similarity:603/1271 - (47%) Gaps:175/1271 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 NFKSYRGHIVVGPLKQ-FNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLNDLIHGSSIGKPV 97
            |||||.|.:.:||..| |.|:||||||||||.:|::.||.|.:.:.:|.||::.|||.|| ..|.
  Fly    96 NFKSYAGEVELGPFHQSFTAIIGPNGSGKSNVIDSMMFVFGCRANRIRCKRVSTLIHSSS-SYPN 159

  Fly    98 SRSCYVTAKF--VLNE---------ERHMDFQR-AVIGGSSEYRINGESVSSSTYLNKLEKIGIN 150
            .|||.|...|  ::::         :..:..:| |:...||.|:||.:..........|:|..::
  Fly   160 LRSCSVAVHFKQIVDKGDGTCEDVPDSSIVIERTAMSDNSSYYQINDKRAQLKDVAKLLKKHHVD 224

  Fly   151 VKAKNFLVFQGAVENIAMKTPKERT-------ALFEEISGSGLLKDDYNRLKQEMIVAEEETQFT 208
            ::...||:.||.||:|||..||.:|       ...|:|.|:    ..|.|..|::          
  Fly   225 LEHNRFLILQGEVESIAMMKPKGQTENETGMLEYLEDIVGT----QRYIRPLQQI---------- 275

  Fly   209 YQKKKGIAAERKEAKHEKME-ADRYTR-LQNEYNE------KQVEYQLFRLFHVERDIRKFTSDL 265
            .|:...:..:|.| ||.:.: |:|..: |:..:||      |:.|....:.||:::.|....|.|
  Fly   276 NQRVDQLTDDRTE-KHNRCKLAEREMKDLEQPFNEAVDYLKKENELVRTKSFHIQKIISIKKSKL 339

  Fly   266 EVRQQEVKAVEQRKEAADE---ILREKKKDAGKITRDLAKIDQEIREFETQMNKRRPLYIKAKEK 327
            |...||.:|..:..:..||   .|::.:.:...|.|      :||.|:|..:.||..:    |::
  Fly   340 EQYTQEHEACAEELKTHDEGTAALKQSRAEKETIIR------KEIEEYEALVKKREQI----KKR 394

  Fly   328 VTHCKKKLISLQKTLETAREADNAHQSDIRKLEKQLADVEALKKRFEDEIENESQRRGKSVNMEE 392
            :...:.....:|.|:|...:.....::.|.|.||:|.|:..|.::.:.||| :..::.:|:.:.:
  Fly   395 LVTVESAYTEIQSTMENTNKQRKKDKAQIEKNEKELEDLHKLPEKNQREIE-DCNKKLESLEVSK 458

  Fly   393 GLVQEYDRLKQEAEAT-----ATQYRSELDSVNREQKSEQDTLDGETNRRASVEESFKKLTLQRE 452
            ..:.| :..||:||.|     .|:.|.:|.......|.:.:|..||    ..|.||..|:..|.|
  Fly   459 VTLNE-ELEKQQAELTKTTAPLTEKRLKLSDELVGLKEKVNTAKGE----VQVFESQLKILKQAE 518

  Fly   453 EAVKRR-DKLMDHIKSSQAALEEQNRIKDELRRDVGTSKEKIAEKQRELE--------------D 502
            ....|: :.|....:.||.:|||:....|||:..:...|.:||.|..|::              .
  Fly   519 TTESRKYETLKSSYEQSQKSLEEKVTRVDELKESIPRMKTEIASKSAEVDKMVKEERNLSMQCNK 583

  Fly   503 VRDQLGDAKSDKHEDARRKKKQEVVELFKKQ--VPGVYDRMINMCQPTHKRYNVAVTKVLGKFME 565
            :|.::.:..|.........|..:.:...|.:  :||:..|:.:: .....:|::|::...|: ::
  Fly   584 LRTEINERSSVMQAQRSNNKVLDFLMRMKMEGKIPGILGRLGDL-GGIDAKYDIAISTACGR-LD 646

  Fly   566 AIIVDTEKTARHCIQILKEQMLEVETFLPLDYLQVKPLKERLRNISDPRNVRLVFDVLKFEPQEI 630
            .|:.|..:||...|..|||..:...||:.||.:: ...:|....|:.|.||..::|::|.|...:
  Fly   647 NIVTDNYETASAAIGALKEYNVGRATFITLDKIE-HHRREANSRINTPENVPRLYDLVKVEDDRV 710

  Fly   631 ERAVLFATGNALVCETPEDAMKVAYEIDRSRFDALALDGTFYQKSGLIS-GGSHDLARK------ 688
            ..|..||..|.|||:..|...::||  .|.|:..:.|.|...:.:|.:| |||..:..|      
  Fly   711 RTAFYFALRNTLVCDDLEQGTRIAY--GRERYRVVTLRGEMIEMTGTMSGGGSRPIRGKMGTQVR 773

  Fly   689 ---AKRWDEKHMAQLKMQKERLQ-EELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSK 749
               |:..|...::|..::..::| |||:..|...::|.  .::|.:|:.|:|.|:....:.:...
  Fly   774 TKTAESADSSQISQKALEDMQIQAEELQARVNYCQEQQ--GSLEREIQTLKNGLQRDEAEYKRLA 836

  Fly   750 KSISQYDNQ----LQQVQSQLDEFGPKILEIERRMQNREEHIQEIKENMNNVEDKVYASFCRRLG 810
            .||:..:.|    |:|.::|......|..: ||.::.|||.|:..|:.:..      |.|..:..
  Fly   837 VSITSLEQQMASNLKQCEAQRQRMLKKTTD-ERAVKEREEQIEAAKQELEQ------AQFAEQAV 894

  Fly   811 VKNIRQYEERELVMQQERARKRAEFEQQIDSINSQLDFEKQKDTKKNV--ERWERSVQ----DEE 869
            ...|.:.:.:...::.|..:   ..|.:|..:|||::.........||  ...:|::.    :..
  Fly   895 SSQIEEIQNQYDTLRNESVK---PVEAKIKKVNSQIEKLAANVRSLNVGLATADRNITKITGNNN 956

  Fly   870 DALEGLKLAEARYLKEIDED----KEKMEKFKQDKQAKKQAVDDMEEDISKARKDVANLAKEIHN 930
            :..|.:|.||.: ||.::||    |||.|:.:::.:..:.:::..:...|..:|::..:.||.:.
  Fly   957 NLRENIKAAEEK-LKSLNEDRNKAKEKKEELEKEIEESEASIEGAKSQSSDIKKEIDEITKEENK 1020

  Fly   931 VGSHLSAVESKIEA---KKNERQNIL--LQAKTDCIVVPLLRGSLDDAVRQSDPDVPSTSAAMEN 990
            .......:::|::|   |.|:.:|.:  .||:    :.||   .|::...:::|..|        
  Fly  1021 RNIERIEIDTKLQAAAGKMNKVKNDIPGWQAQ----LAPL---KLNEIPGETEPQAP-------- 1070

  Fly   991 IIEVDYSSLPREYTKLKDDSAFKKTHEMLQKDLQSKLDVLERIQTPNMKALQKLDAVTEKVQSTN 1055
            :.|::...|..|..:...   :|:|  ||::||::|...|..|:..|.|.|..||.|        
  Fly  1071 LKELNEEELEAETLEALQ---YKQT--MLEEDLKTKKPNLSCIKEFNEKRLVYLDRV-------- 1122

  Fly  1056 EEFENARKKAKRAKAAFERVKNERSSRFVACCQHISDAIDGIYKKLARNEAAQAYIGPD------ 1114
            ...|:...|....:..:|.|:..|...|:.....|:..:..:|:.:.        :|.|      
  Fly  1123 RVLEDITSKRNEMRDKYEEVRKRRYKEFMDGFSIITRKLKEMYQMIT--------LGGDAELELV 1179

  Fly  1115 NPEEPYLDGINYNCVAPGKRFQPMNNLSGGEKTIAALALLFSTHSFHPAPFFVLDEIDAALDNTN 1179
            :..:|:.:|:|:....|.|.::.::||||||||:::|||:|:.|.:.|:|.:.:||||||||..|
  Fly  1180 DSMDPFTEGVNFTVRPPKKSWKYISNLSGGEKTLSSLALVFALHYYKPSPLYFMDEIDAALDFKN 1244

  Fly  1180 IGKVASYIRDHTTNLQTIVISLKEEFYGHADALVGI 1215
            :..|..||::.|.|.|.|::||:...:..|:.||||
  Fly  1245 VSIVGHYIKERTKNAQFIIVSLRVNMFELANFLVGI 1280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC1NP_651211.2 Smc 26..1216 CDD:224117 336/1271 (26%)
ABC_SMC1_euk 27..>171 CDD:213242 57/149 (38%)
SMC_hinge 535..653 CDD:214944 34/117 (29%)
DUF4700 <697..>810 CDD:292399 28/117 (24%)
ABC_SMC1_euk <1130..1232 CDD:213242 40/86 (47%)
gluNP_723996.1 ABC_SMC4_euk 87..>246 CDD:213241 57/150 (38%)
Smc 89..1281 CDD:224117 336/1271 (26%)
SMC_hinge 618..733 CDD:214944 34/117 (29%)
ATP-synt_B <825..904 CDD:304375 18/85 (21%)
ABC_SMC4_euk <1196..1290 CDD:213241 40/85 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464467
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 69 1.000 Inparanoid score I406
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D326079at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.800

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