Sequence 1: | NP_651211.2 | Gene: | SMC1 / 42853 | FlyBaseID: | FBgn0040283 | Length: | 1238 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_999854.1 | Gene: | smc3 / 324475 | ZFINID: | ZDB-GENE-030131-3196 | Length: | 1216 | Species: | Danio rerio |
Alignment Length: | 1374 | Identity: | 301/1374 - (21%) |
---|---|---|---|
Similarity: | 554/1374 - (40%) | Gaps: | 362/1374 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 26 FLEYIEMENFKSYRGHIVVGPL-KQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLNDLIH 89
Fly 90 GSSIGKPVSRSCYVTAKFVLNEER------HMDFQRAVIGGSSEYRINGESVSSSTYLNKLEKIG 148
Fly 149 INVKAKNFLVFQGAVENIAMKTPKERTALFEEISGSGLLKDDYNRLKQEMIVAEEETQFTYQKKK 213
Fly 214 GIAAERKEAKHEKME------ADRYTRLQNEYNEKQVEYQLFRLFHVERDIRKFTSDLEVRQQEV 272
Fly 273 KAVEQRKEAADEILREKKKDAGKITRDLAKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLIS 337
Fly 338 LQKTLETAREADNAHQSDIRKLEKQLADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDRLK 402
Fly 403 QEAEATATQYRS----ELDSVNREQKSEQDTLD-----GETNRRASVEES---FKKLTLQREEAV 455
Fly 456 --KRRD------KLMDHIKSSQAALEEQNRIKDELRRDVGTSKEKIAEKQRELEDVRDQL----- 507
Fly 508 ---------GDAKSDKHEDARRKKK-----------------QEVVELFKKQVPGVYDRMIN--- 543
Fly 544 -------MCQPTHKRYNVAVTKVLGKFMEAIIVDTEKTARHCIQILKEQMLEVE-TFLPLDYLQV 600
Fly 601 KPLKERLRNISDPRNVRLVFDVLKFEPQEIERAVLFATGNALVCETPEDAMKVAYEIDRS-RFDA 664
Fly 665 LALDGTFYQKSGLISGGSHDLARKAKRWDEKHMAQLKMQKE--RLQEELKELVKKSRKQSELATV 727
Fly 728 ESQIKGLENRLKYSMVDLESSKKSISQYDNQLQQVQSQLDEFGP---------KILEIERRMQNR 783
Fly 784 EEHIQEIKENMNNVEDKVYASFCRRLGVKNIRQYEERELVMQQERARKRAEFEQQIDSINSQLDF 848
Fly 849 EKQK------DTKKNVERWERSVQDEEDALEGLKLAEARYL-----KEIDEDKEKMEKFKQ---- 898
Fly 899 ------------------DKQAKKQ----AVDDMEEDISKARKDV---ANLAKEIHNVGSHLSAV 938
Fly 939 ESKIEAKKNERQNILLQAKTDCIVVPLLRGSLDDAVRQSDPDVPSTSAAMENIIEVDYSSLPREY 1003
Fly 1004 TKLKDDSAFKKTHEMLQKDLQSKLD----VLERIQTPNMKALQK---LDAVTEKVQSTNEEFENA 1061
Fly 1062 RKKAKRAKAAFERVKNERSSRFVACCQHISDAIDGIYKKLARN--EAAQAYI------------- 1111
Fly 1112 --GPDNPEE----------------PYLD---GINYNCVAPGKR--FQPMNNLSGGEKTIAALAL 1153
Fly 1154 LFSTHSFHPAPFFVLDEIDAALD-------NTNIGKVASYIRDHTTNLQTIVISLKEEFYG---- 1207
Fly 1208 ----HADAL 1212 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SMC1 | NP_651211.2 | Smc | 26..1216 | CDD:224117 | 301/1374 (22%) |
ABC_SMC1_euk | 27..>171 | CDD:213242 | 42/150 (28%) | ||
SMC_hinge | 535..653 | CDD:214944 | 28/128 (22%) | ||
DUF4700 | <697..>810 | CDD:292399 | 28/123 (23%) | ||
ABC_SMC1_euk | <1130..1232 | CDD:213242 | 33/100 (33%) | ||
smc3 | NP_999854.1 | Smc | 1..1193 | CDD:224117 | 299/1365 (22%) |
ABC_SMC3_euk | 3..>158 | CDD:213239 | 43/156 (28%) | ||
RILP-like | <222..337 | CDD:304877 | 28/135 (21%) | ||
BAR | <388..>482 | CDD:299863 | 20/94 (21%) | ||
SMC_hinge | 530..642 | CDD:214944 | 27/124 (22%) | ||
MIT_CorA-like | <700..>836 | CDD:294313 | 35/163 (21%) | ||
P-loop_NTPase | <1104..1198 | CDD:304359 | 31/93 (33%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1196 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18937 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |