DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsp68 and hspa12a.3

DIOPT Version :9

Sequence 1:NP_524474.1 Gene:Hsp68 / 42852 FlyBaseID:FBgn0001230 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001038346.3 Gene:hspa12a.3 / 559031 ZFINID:ZDB-GENE-030131-8896 Length:571 Species:Danio rerio


Alignment Length:613 Identity:122/613 - (19%)
Similarity:217/613 - (35%) Gaps:169/613 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IGIDLGTTYSCVGV-------------------FQYGKVEIIANDQGNRTTPSYVAFTDSE--RL 47
            |.||.||:||...:                   |.|...:          ||:.:.|.:.|  :.
Zfish     8 IAIDFGTSYSGYAISFKTKQPQESIQIPNWGVNFGYNTFK----------TPTCILFDEHETFQK 62

  Fly    48 IG-DAAKNQVAMNPKNSVFDAKRLIGRRFD----DSKIQEDIKHWPFKVINDNGKPKISVEFKGA 107
            .| ||........||:..  .|..:...|.    |.:|..|:    .....:.|:.|....|.. 
Zfish    63 FGYDAMMTYTRSTPKSQA--RKSFLFEHFKMELYDKEIHRDL----MITAKNGGQMKALTVFSE- 120

  Fly   108 NKCFSPEEISSMVLTKMKE--TAEAYLGTTVKDAVITVPAYFNDSQRQATKDAGAIAGINV---- 166
                |...:....|.|:||  |.:.::.:.| ..|:||||.:|.:.:|..::|...||:.:    
Zfish   121 ----SLRYLKDHALEKIKENTTGKTFIASDV-TWVLTVPAIWNAAAKQFMREAAIEAGLVIESEP 180

  Fly   167 --LRIINEPTAAALAYGLDKNLKGERNV-----------------LIFDLGGGTFDVSI-LTIDE 211
              |....||.||::   ..|.|..|..:                 ::.|.||||.|::: ..:::
Zfish   181 ERLVFALEPEAASI---YCKQLPSEGYISEEACRDTLEQKPGTQYMVVDCGGGTIDITVHEVVED 242

  Fly   212 GSLFEVRSTAGDTHLGGEDFDNRLVNHFAEEFKRK-YKKDLRSNPRALRRLRTAAERAKR----- 270
            |.|.|:.:.:|: .:||:..|.:.::...|.|..| |.|..:..|....:|:.....||.     
Zfish   243 GKLKELNAASGN-DMGGQTVDRKFISFLKEIFSEKIYNKFEQDFPAEALKLKYDIALAKSCDQLV 306

  Fly   271 ------TLSSSTEASLEIDALYEGHDFYSKVSRARFEE------------LCGDLFRNTLEPVEK 317
                  ||....:....|::.:||      |..|.::|            ...:..:.|.|.:||
Zfish   307 LIQCPVTLQDLAKKEKAIESYFEG------VEGAEWDEGSIIIKEDKLQSFFDESLKTTAEKLEK 365

  Fly   318 ALKDAKMDKSQIHDIVLVGGSTRIPKVQNLLQNFFGGKTLNLSINPD------------------ 364
            .:.:.:::   |..::||||......::..|:..|....:...:.|.                  
Zfish   366 IMSNPELN---IEYMLLVGGFAECKILKKFLKERFDKCKIVCPVEPQVVIIKGAIRYAKQPKVVK 427

  Fly   365 ---EAVAYGAAIQA---AILSGDKSSEIKDVLLVDVAPLSLGIETAGGVMTKLIERNSRIPCKQS 423
               .|:.||..|.|   .:|...|:|.:.          |.|...........:.:...:.|.:.
Zfish   428 SRMSALTYGIRIDAPFDKVLHKGKTSYVN----------SEGQTYCDVCFETFVRKGESVNCDEV 482

  Fly   424 KT--FTTYADNQPAVTIQVFEGERALTKDNNV----------LGTFDLTGVPPAPRGVP---KID 473
            :.  |.....||...|.|.|.     |.:..|          :|.|.: |:|....|:.   |::
Zfish   483 RQFFFNPSDTNQTFATFQFFS-----TNEKQVQFIDEPGVESVGVFQV-GMPKTDGGLSREIKLE 541

  Fly   474 VTFDLDANGILNVTAKEQGTGNAKNITI 501
            :.|   .:..:..||.:..:|...::.:
Zfish   542 IKF---GSTEMKATATDVDSGETTSVKL 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsp68NP_524474.1 PTZ00009 2..635 CDD:240227 122/613 (20%)
HSPA1-2_6-8-like_NBD 3..379 CDD:212675 98/474 (21%)
hspa12a.3NP_001038346.3 HSPA12_like_NBD 6..420 CDD:212671 93/446 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.