DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg6 and Becn2

DIOPT Version :9

Sequence 1:NP_651209.1 Gene:Atg6 / 42850 FlyBaseID:FBgn0264325 Length:422 Species:Drosophila melanogaster
Sequence 2:XP_038947366.1 Gene:Becn2 / 289269 RGDID:1563293 Length:428 Species:Rattus norvegicus


Alignment Length:434 Identity:151/434 - (34%)
Similarity:228/434 - (52%) Gaps:43/434 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FACQRCLQPIVLDEQ----LEKISVHAMAELSLPIYG------------DNGNTLDPQDASSFDH 59
            |.|.||.:|:.|.:|    || :..||.....:|:.|            |.|.|.......:   
  Rat     6 FLCHRCNEPLKLLQQQGGPLE-VQHHANLPTEMPVSGQSRVRTSHRAHSDGGRTCQGGACCT--- 66

  Fly    60 FVPPYRLTDSINGTGFMLVSDGRDNKKMSAAFKLKAELFDCLSSNSEIDHPLCEECADSMLEIMD 124
                           |.|:.:....:.:........|:|:.||....:|||||.:|.|::|..:|
  Rat    67 ---------------FTLLGESVSVRTLHTVQNTTIEIFEILSEQKVVDHPLCVDCTDNLLVQLD 116

  Fly   125 RELRIAEDEWDVYKAYLDE----LEQQRVAPNVEALDKELDELKRSEQQLLSELKELKKEEQSLN 185
            .:|.:...:...|:.:|:.    .|::..|.:.| |..||..|::.|.:|:.||::|......:.
  Rat   117 DQLTLVASDNQSYQGFLERQSLVSEEETEALHAE-LRAELSGLEQEEARLVQELEDLDGHHARVA 180

  Fly   186 DAIAEEEQEREELHEQEESYWREYTKHRRELMLTEDDKRSLECQIAYSKQQLDKLRDTNIFNITF 250
            ..:...:.|.:||::|.|.:...|:..:.|.:...|...|:|.|:.|:..||..||.|:||:.||
  Rat   181 AELRAAQAESKELYQQNEEHRASYSVLKMEQLELTDQLSSVENQLQYALGQLCHLRKTSIFDATF 245

  Fly   251 HIWHAGHFGTINNFRLGRLPSVSVDWSEINAAWGQTVLLLSALARKIGLTFERYRVVPFGNHSYV 315
            .|...|..|.|||||||.||:|.|.|:|||||||||.|||.:|::..||.|:||::||.|:|||:
  Rat   246 TISDDGPLGMINNFRLGCLPAVRVGWTEINAAWGQTALLLFSLSKMAGLQFQRYQLVPLGDHSYL 310

  Fly   316 EVLGENRELPLYGSGGFKFFWDTKFDAAMVAFLDCLTQFQKEVEKRDTEFLLPYKME--KGKIID 378
            :.|..:..|||:..|....|.:..||.||.||||||.||.:|.||.:....|||::.  :|.:.|
  Rat   311 KSLTADEVLPLFSDGNHSVFLNNTFDCAMKAFLDCLQQFVEETEKDERYPCLPYRIHPLEGVMED 375

  Fly   379 -PSTGNSYSIKIQFNSEEQWTKALKFMLTNLKWGLAWVSSQFVS 421
             ..:|:...|:...|:||:|::||||||.:||..:||.||...|
  Rat   376 IGDSGDCCPIRTHLNTEEEWSRALKFMLADLKLIVAWASSSSTS 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg6NP_651209.1 APG6 110..418 CDD:282029 125/314 (40%)
Becn2XP_038947366.1 APG6_N 102..232 CDD:407569 34/130 (26%)
APG6 238..415 CDD:397986 86/176 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339920
Domainoid 1 1.000 93 1.000 Domainoid score I7375
eggNOG 1 0.900 - - E1_KOG2751
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1085752at2759
OrthoFinder 1 1.000 - - FOG0002528
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12768
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1898
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.810

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