DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and MIP6

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_011879.1 Gene:MIP6 / 856408 SGDID:S000001057 Length:659 Species:Saccharomyces cerevisiae


Alignment Length:185 Identity:51/185 - (27%)
Similarity:86/185 - (46%) Gaps:29/185 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPY-AFIEYSNYQAATTALTAM 65
            |.::.||:.|.||.|..:::.::..|||:||:||..|..:..|.|: ||:.|.|.:.:..|...:
Yeast   308 DNARSKTILVKNLPSDTTQEEVLDYFSTIGPIKSVFISEKQANTPHKAFVTYKNEEESKKAQKCL 372

  Fly    66 NKRLFLEKEIKVNWATSPG------NQPKTDISSHHHIFVGDLSPEIETE-----TLREAFAPFG 119
            ||.:|....|   | ..||      ||..|:..:  .:::.:||.....|     .|:|... |.
Yeast   373 NKTIFKNHTI---W-VGPGKDKPVHNQIGTNKKT--KVYLKNLSFNCNKEFISQLCLQEKIR-FS 430

  Fly   120 EISNCRIVRDPHTMKSKGYAFVSFVK---KAEAENAIQAMNGQWIGSRSIRTNWS 171
            ||   :|.    ...|..:.|...|:   :::||.....::.:.|||..:..:||
Yeast   431 EI---KIT----NYNSLNWTFCGHVECFSRSDAERLFNILDRRLIGSSLVEASWS 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 23/71 (32%)
RRM2_TIA1_like 96..170 CDD:409789 17/81 (21%)
RRM_SF 221..292 CDD:473069
MIP6NP_011879.1 RRM1_PES4_MIP6 111..190 CDD:410180
RRM2_PES4_MIP6 200..275 CDD:410181
RRM3_PES4_MIP6 313..385 CDD:410182 26/75 (35%)
RRM4_PES4_MIP6 400..478 CDD:410183 17/87 (20%)
Blue background indicates that the domain is not in the aligned region.

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