DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and PUB1

DIOPT Version :9

Sequence 1:NP_001262897.1 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_014382.1 Gene:PUB1 / 855716 SGDID:S000004961 Length:453 Species:Saccharomyces cerevisiae


Alignment Length:352 Identity:102/352 - (28%)
Similarity:150/352 - (42%) Gaps:69/352 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND--PYAFIEYSNYQAATTALTAM 65
            |:..:.|||||||.:::||:|...|...||:.:.||:.:..|.  .|||:||.....|..||..:
Yeast    71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTL 135

  Fly    66 NKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDP 130
            |.:......:|:|||.........|.   .::|||||:..::.||||.||..|....:..::.|.
Yeast   136 NGKQIENNIVKINWAFQSQQSSSDDT---FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM 197

  Fly   131 HTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSK----------GG 185
            .|..|:||.||||..:.:|:||:.:|.||.:..|.:|.||:.:     |:.:.          |.
Yeast   198 QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK-----RDNNNNNNYQQRRNYGN 257

  Fly   186 GQGGG-------------MG-------------GGPGNGSGV-----------KGSQRHTF---- 209
            ...||             ||             |.|.:..|:           :..|..|.    
Yeast   258 NNRGGFRQYNSNNNNNMNMGMNMNMNMNMNNSRGMPPSSMGMPIGAMPLPSQGQPQQSQTIGLPP 322

  Fly   210 -------EEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTK 267
                   :.:...:.|..||.|.|..|......||: ..|..||.|.|.:.:.:||..|||:.|.
Yeast   323 QVNPQAVDHIIRSAPPRVTTAYIGNIPHFATEADLI-PLFQNFGFILDFKHYPEKGCCFIKYDTH 386

  Fly   268 EAAAHAIEHTHNSEVHGNLVKCFWGKE 294
            |.||..|....|....|..::..||||
Yeast   387 EQAAVCIVALANFPFQGRNLRTGWGKE 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_001262897.1 ELAV_HUD_SF 5..274 CDD:273741 94/328 (29%)
RRM1_TIA1_like 9..80 CDD:240798 27/72 (38%)
RRM2_TIA1_like 96..170 CDD:240799 29/73 (40%)
RRM3_TIA1_like 221..294 CDD:240800 26/72 (36%)
PUB1NP_014382.1 RRM1_PUB1 77..150 CDD:410026 27/72 (38%)
RRM2_PUB1 161..240 CDD:410031 31/81 (38%)
RRM3_PUB1 341..414 CDD:410033 28/74 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 151 1.000 Inparanoid score I1117
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000924
OrthoInspector 1 1.000 - - otm46527
orthoMCL 1 0.900 - - OOG6_103013
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1842
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.850

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