DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rox8 and RBP1

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_176143.1 Gene:RBP1 / 842216 AraportID:AT1G58470 Length:360 Species:Arabidopsis thaliana


Alignment Length:411 Identity:92/411 - (22%)
Similarity:144/411 - (35%) Gaps:125/411 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 HHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQ 159
            :.:|||.::.|...|.|::.|:.:|.:....:.::..|.|.:|:.||.|....:...|::  :..
plant     6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR--DTH 68

  Fly   160 WIGSRSIRTNWSTRKLPPPREP-------SKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSS 217
            :|..:.:....:.||....::|       .|.....||:.....||                   
plant    69 FILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNG------------------- 114

  Fly   218 PTNTT--VYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKD------KGFSFIKFVTKEAAAHAI 274
            .|:.|  ::.||...|...:: ...:|.:||...||.|..|      :||.|:.:.:::    ::
plant   115 VTSRTKKIFVGGLSSNTTEEE-FKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED----SV 174

  Fly   275 EHTHNSEVHGNL------VKCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAANAAVAAGAGM 333
            |....|..| .|      ||....||....|:.|.:|...:.::..| ...|...|     |.||
plant   175 EVVMQSNFH-ELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQA-TPYVPEQN-----GYGM 232

  Fly   334 PGQMMTQQQIAAATGAAIPGQMMTPQQI--------AAQYPYAYQQMGY-----WYPPATYPT-- 383
            ..|.                    |..:        |.||||.||....     |..|...||  
plant   233 VLQF--------------------PPPVFGYHHNVQAVQYPYGYQFTAQVANVSWNNPIMQPTGF 277

  Fly   384 -------TQMQT------QYMQ---------QGYYPYAYPTSAQQAGGVPCIQF--------SAA 418
                   |...|      |||.         .||.|.|:|.:...||.: ..||        |.|
plant   278 YCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAWPVTGDAAGAL-IHQFVDLKLDVHSQA 341

  Fly   419 GYRMVPPNVAWGVP---GTVV 436
            ..||...|:  |:|   ||.:
plant   342 HQRMNGGNM--GIPLQNGTYI 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 16/73 (22%)
RRM_SF 221..292 CDD:473069 20/84 (24%)
RBP1NP_176143.1 PABP-1234 <8..>277 CDD:130689 69/321 (21%)
RRM2_Hrp1p 121..198 CDD:409767 19/82 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.