DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and AT5G59860

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_200794.1 Gene:AT5G59860 / 836108 AraportID:AT5G59860 Length:157 Species:Arabidopsis thaliana


Alignment Length:110 Identity:30/110 - (27%)
Similarity:53/110 - (48%) Gaps:24/110 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 NKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVG---------DLSPEIETETLREAFAPFGEI 121
            |||...:..|:          |::.||....:..|         .||.....::||:.||||   
plant    43 NKRTKYKMRIR----------PRSSISKRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFAPF--- 94

  Fly   122 SNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSI 166
              .|:::|..|.:.||:.|::|..:.:|:.|::|:||:.:..|.|
plant    95 --ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 4/13 (31%)
RRM2_TIA1_like 96..170 CDD:409789 23/80 (29%)
RRM_SF 221..292 CDD:473069
AT5G59860NP_200794.1 RRM 73..144 CDD:440488 22/70 (31%)
Blue background indicates that the domain is not in the aligned region.

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