DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and AT5G47620

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001190485.1 Gene:AT5G47620 / 834812 AraportID:AT5G47620 Length:453 Species:Arabidopsis thaliana


Alignment Length:219 Identity:57/219 - (26%)
Similarity:94/219 - (42%) Gaps:54/219 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAI---QAMNG 158
            :|:|.:|.|...:.||:.|..|||:....|::|..|.:::|:.||.|.....||..:   ..::|
plant     8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDG 72

  Fly   159 QWIGSRSIRTNWSTR-------------KLPPPREP----SKGGGQGGGMGGGPGNGSGVKGSQR 206
            : |...||..|...|             |...||:.    :|   ....:.|.||          
plant    73 K-ILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNK---SNSSLQGSPG---------- 123

  Fly   207 HTFEEVYNQSSPTNT-TVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKD------KGFSFIKF 264
                       |:|: .::.||...:|...: ..|:|.|||.|.||.|..|      :||.||.:
plant   124 -----------PSNSKKIFVGGLASSVTEAE-FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY 176

  Fly   265 VTKEAAAHAIEHTHNSEVHGNLVK 288
            .::||....::.|.: |::|.:|:
plant   177 DSEEAVDKVLQKTFH-ELNGKMVE 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 23/75 (31%)
RRM_SF 221..292 CDD:473069 23/75 (31%)
AT5G47620NP_001190485.1 RRM_SF 8..73 CDD:473069 19/64 (30%)
RRM2_Hrp1p 129..206 CDD:409767 23/73 (32%)
Blue background indicates that the domain is not in the aligned region.

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