DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rox8 and ALY4

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_198588.2 Gene:ALY4 / 833750 AraportID:AT5G37720 Length:288 Species:Arabidopsis thaliana


Alignment Length:194 Identity:47/194 - (24%)
Similarity:73/194 - (37%) Gaps:30/194 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP--YAFIEYSNYQAATTALTAMNKRLFL 71
            |:|.|||..|:.:.:..|||.:|.|:...|..:....|  .|.:.|.....|..||...|..|..
plant    95 LHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLD 159

  Fly    72 EKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIE-TETLREAFAPFGEISNCRIVRDPHTMKS 135
            .:.:::. .....|..:..:|...::.|..|:..:: |..:::.....|.:...|..|.|....|
plant   160 GRPMRLE-ILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVS 223

  Fly   136 KGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGG-GMGGGPGNG 198
            :               .:...|.|..|.|..|..:..|          |.|.|| |.|||.|||
plant   224 R---------------RLPIHNQQGGGMRGGRGGFRAR----------GRGNGGRGRGGGRGNG 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 20/72 (28%)
RRM2_TIA1_like 96..170 CDD:409789 13/74 (18%)
RRM_SF 221..292 CDD:473069
ALY4NP_198588.2 RRM_THOC4 93..167 CDD:410081 20/72 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.