DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and SR34b

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001328194.1 Gene:SR34b / 828027 AraportID:AT4G02430 Length:292 Species:Arabidopsis thaliana


Alignment Length:193 Identity:47/193 - (24%)
Similarity:78/193 - (40%) Gaps:28/193 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 SHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN 157
            |...|:||:|..:|....:.:.|:.:|.:....:...|   :..|||||.|....:|::||...:
plant     5 SSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDADDAIYGRD 66

  Fly   158 GQWIGSRSIR---TNWSTRKLPPPREPSKG---GGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQS 216
            |.......:|   .:...|.....|....|   ||:|||.|||...|...:...|          
plant    67 GYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYR---------- 121

  Fly   217 SPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKD-KGFS-FIKFVTKEAAAHAIEHT 277
                  |...|.|.:....|| ..|..:.|.:...:||:| :|.: .:.:.:.|...:|::.|
plant   122 ------VVVSGLPSSASWQDL-KDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYALDDT 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 19/76 (25%)
RRM_SF 221..292 CDD:473069 14/59 (24%)
SR34bNP_001328194.1 RRM1_SF2_plant_like 8..79 CDD:410011 19/73 (26%)
RRM2_SF2_plant_like 120..192 CDD:410014 15/75 (20%)
Blue background indicates that the domain is not in the aligned region.

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