DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rox8 and RS31a

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_182184.1 Gene:RS31a / 819273 AraportID:AT2G46610 Length:250 Species:Arabidopsis thaliana


Alignment Length:526 Identity:98/526 - (18%)
Similarity:179/526 - (34%) Gaps:178/526 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 RNRVSGTILQQLKQLKELYMHNSDMK------------------KLPKEL--------------- 203
            ||.:|.|.|.....|.|.|...:..:                  ::|::|               
plant   240 RNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGW 304

  Fly   204 -VSNLPKLETLYLDKNKLKHVSQFTTLPNL-----MYLNISSNQLVKLQENVFSRLPKL--KILD 260
             :.|.......::|.|  ...:|||. |.|     :.||..:.||.:.|......|.:|  ::..
plant   305 EIRNTATGRVYFVDHN--NRTTQFTD-PRLSANLHLVLNRQNQQLKEQQPPQVVPLCQLPDEVEC 366

  Fly   261 LSSNKLKRLATDLFMENNHLEVFKADDQKCSELVLEKNVFTEQKFLKEVSLSNCKITALPEGIFQ 325
            |:..:.||                       :||.:..:..::...::....:|:|....|.||:
plant   367 LTVPRYKR-----------------------DLVHKLKILRQELSQQQPQAGHCRIEVSREEIFE 408

  Fly   326 HCLQLFKVDLSHNKLQSL-PEDL---LSDSFAVE------------LYLQHNEFIN--------- 365
            .         |:.::..: |:||   |...|..|            |||..:|.:|         
plant   409 E---------SYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYS 464

  Fly   366 --------MQPES--------------QLLGANDF-SHYLD--YVSPFSSRQLLKSFSSLKQLQ- 404
                    :.|:|              :::|...| .||:|  :..|| .:|||....:|..:: 
plant   465 RDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPF-YKQLLGKPITLDDMES 528

  Fly   405 ----LHNNQLYMIDVDAFKSQSHSLIFLNLSHNRLTLHE--NNDRMINST------------SWI 451
                |||:.:::::.|......|:....:.::..|..||  .:.:.|..|            :|.
plant   529 VDPDLHNSLVWILENDITGVLDHTFCVEHSAYGELIQHELKPSGKSIPVTEETKKEYVRLYVNWR 593

  Fly   452 LFRPL-IKLAHLDLSYNEITNIFDHFKNFMDNLQSLDLSHNFITHISYTDFPFLSAKINLVNLES 515
            ..|.: .:...|...:||:  |..|.....|. :.|:|   .|..:         .||::.:.:|
plant   594 FLRGIEAQFLALQKGFNEV--IPQHLLKAFDE-KELEL---IICGL---------GKIDVNDWKS 643

  Fly   516 N-KITHPDFDLSRIEPLHRLPNEIFLADNPLNCDCISSSLVTYLQAHLNASKSIPLKG---LQCA 576
            | ::.|...|.:.::...:.            .:.........|...:..|..:||:|   ||.|
plant   644 NTRLKHCTADSNIVKWFWKA------------VESFDEERRARLLQFVTGSSRVPLQGFKALQGA 696

  Fly   577 QPPALF 582
            ..|.||
plant   697 AGPRLF 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789
RRM_SF 221..292 CDD:473069 15/77 (19%)
RS31aNP_182184.1 RRM_SF 2..73 CDD:473069
RRM_SF 96..165 CDD:473069
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.