DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rox8 and tia1

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_997793.1 Gene:tia1 / 793165 ZFINID:ZDB-GENE-030131-1506 Length:386 Species:Danio rerio


Alignment Length:470 Identity:189/470 - (40%)
Similarity:248/470 - (52%) Gaps:97/470 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCK-IIREPGNDPYAFIEYSNYQAATTALTA 64
            ||:.||||||||||...|:|.|::.||..:||.|||| |:...|||||.|:|:..::.|..:|.|
Zfish     2 MDDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFFEHRHAAASLAA 66

  Fly    65 MNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRD 129
            ||.|..:.||:||||||||.:| |.|.|:|.|:|||||||||.|:.:|.||||||.||:.|:|:|
Zfish    67 MNGRKIMGKEVKVNWATSPSSQ-KKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKD 130

  Fly   130 PHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGG 194
            ..|.|||||.||||..|.:||||||.|.|||:|.|.|||||:|||.|.|:               
Zfish   131 MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--------------- 180

  Fly   195 PGNGSGVKGSQRH-TFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKG 258
                :..:.:.:| :|:||.|||||:|.||||||.... :::.||.:.|..||.|.:||||.|||
Zfish   181 ----ATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTG-LTEQLMRQTFSPFGQIMEVRVFPDKG 240

  Fly   259 FSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAA 323
            :||::|.:.|:|||||...:.:.:.|::|||:||||.                            
Zfish   241 YSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGKET---------------------------- 277

  Fly   324 NAAVAAGAGMPGQMMTQQQIAAATGAAIPGQMMTPQQ----IAAQYPYAYQQMGYWYPPATYPTT 384
                       ..|::..|           |:..|||    .||| ||.  |.|.||..|     
Zfish   278 -----------TDMVSPMQ-----------QVQVPQQSKVGFAAQ-PYG--QWGQWYGNA----- 312

  Fly   385 QMQTQYMQQGYYPYAYPTSAQQAGGVPCIQFSAAGYRMVPPNVAWGVPGTVVPGVTAAAASAAAA 449
            |..:||:..|:....|        ||....::..|:..:.....|...|.|..|   .....|..
Zfish   313 QQISQYVPNGWQVPTY--------GVYGQAWNQQGFNHLQAGAGWAGVGAVSNG---GVVEPAQG 366

  Fly   450 ANGS-LAPQMMYSAA 463
            .||: ||.|.....|
Zfish   367 VNGTVLANQSTMGTA 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 36/71 (51%)
RRM2_TIA1_like 96..170 CDD:409789 49/73 (67%)
RRM_SF 221..292 CDD:473069 32/70 (46%)
tia1NP_997793.1 RRM1_TIA1 9..82 CDD:410027 37/72 (51%)
RRM2_TIA1 94..171 CDD:410030 50/76 (66%)
RRM3_TIA1 204..275 CDD:410032 33/71 (46%)

Return to query results.
Submit another query.