DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and tia1

DIOPT Version :9

Sequence 1:NP_001262897.1 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_997793.1 Gene:tia1 / 793165 ZFINID:ZDB-GENE-030131-1506 Length:386 Species:Danio rerio


Alignment Length:470 Identity:189/470 - (40%)
Similarity:248/470 - (52%) Gaps:97/470 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCK-IIREPGNDPYAFIEYSNYQAATTALTA 64
            ||:.||||||||||...|:|.|::.||..:||.|||| |:...|||||.|:|:..::.|..:|.|
Zfish     2 MDDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFFEHRHAAASLAA 66

  Fly    65 MNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRD 129
            ||.|..:.||:||||||||.:| |.|.|:|.|:|||||||||.|:.:|.||||||.||:.|:|:|
Zfish    67 MNGRKIMGKEVKVNWATSPSSQ-KKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKD 130

  Fly   130 PHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGG 194
            ..|.|||||.||||..|.:||||||.|.|||:|.|.|||||:|||.|.|:               
Zfish   131 MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--------------- 180

  Fly   195 PGNGSGVKGSQRH-TFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKG 258
                :..:.:.:| :|:||.|||||:|.||||||.... :::.||.:.|..||.|.:||||.|||
Zfish   181 ----ATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTG-LTEQLMRQTFSPFGQIMEVRVFPDKG 240

  Fly   259 FSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAA 323
            :||::|.:.|:|||||...:.:.:.|::|||:||||.                            
Zfish   241 YSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGKET---------------------------- 277

  Fly   324 NAAVAAGAGMPGQMMTQQQIAAATGAAIPGQMMTPQQ----IAAQYPYAYQQMGYWYPPATYPTT 384
                       ..|::..|           |:..|||    .||| ||.  |.|.||..|     
Zfish   278 -----------TDMVSPMQ-----------QVQVPQQSKVGFAAQ-PYG--QWGQWYGNA----- 312

  Fly   385 QMQTQYMQQGYYPYAYPTSAQQAGGVPCIQFSAAGYRMVPPNVAWGVPGTVVPGVTAAAASAAAA 449
            |..:||:..|:....|        ||....::..|:..:.....|...|.|..|   .....|..
Zfish   313 QQISQYVPNGWQVPTY--------GVYGQAWNQQGFNHLQAGAGWAGVGAVSNG---GVVEPAQG 366

  Fly   450 ANGS-LAPQMMYSAA 463
            .||: ||.|.....|
Zfish   367 VNGTVLANQSTMGTA 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_001262897.1 ELAV_HUD_SF 5..274 CDD:273741 142/270 (53%)
RRM1_TIA1_like 9..80 CDD:240798 36/71 (51%)
RRM2_TIA1_like 96..170 CDD:240799 49/73 (67%)
RRM3_TIA1_like 221..294 CDD:240800 34/72 (47%)
tia1NP_997793.1 ELAV_HUD_SF 6..270 CDD:273741 145/284 (51%)
RRM1_TIA1 9..82 CDD:241059 37/72 (51%)
RRM2_TIA1 95..174 CDD:241062 52/78 (67%)
RRM3_TIA1 204..277 CDD:241065 35/73 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6775
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 306 1.000 Inparanoid score I2618
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1066369at2759
OrthoFinder 1 1.000 - - FOG0000924
OrthoInspector 1 1.000 - - otm25634
orthoMCL 1 0.900 - - OOG6_103013
Panther 1 1.100 - - O PTHR10352
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1842
SonicParanoid 1 1.000 - - X831
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.860

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