DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and Nifk

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_080748.3 Gene:Nifk / 67949 MGIID:1915199 Length:317 Species:Mus musculus


Alignment Length:144 Identity:36/144 - (25%)
Similarity:57/144 - (39%) Gaps:23/144 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHH 95
            ||.|. .:...|..|       |.::.|.|.:....|:...:|:.|:|...              
Mouse     6 GPAKP-SLALNPQED-------SQFEKALTQIQGRTKKPQQKKKEKLNRGV-------------- 48

  Fly    96 HIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQW 160
             :::|.|...:....:....|.||:||..|:.|...|..|||||||.|..:..|:...:.|:...
Mouse    49 -VYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMDNYL 112

  Fly   161 IGSRSIRTNWSTRK 174
            .|.|.:...:..||
Mouse   113 FGERLLSCKFMPRK 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 12/48 (25%)
RRM2_TIA1_like 96..170 CDD:409789 22/73 (30%)
RRM_SF 221..292 CDD:473069
NifkNP_080748.3 RRM_NIFK_like 48..121 CDD:409748 22/87 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..317
hNIFK_binding 251..288 CDD:463489
Blue background indicates that the domain is not in the aligned region.

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