DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rox8 and Rbm4b

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_079993.2 Gene:Rbm4b / 66704 MGIID:1913954 Length:357 Species:Mus musculus


Alignment Length:360 Identity:86/360 - (23%)
Similarity:140/360 - (38%) Gaps:51/360 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLEK 73
            |::|||....:|..:.:||...|.|..|.||:.     |.|:...:..||..|:  .|...:...
Mouse     4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-----YGFVHIEDKTAAEDAI--RNLHHYKLH 61

  Fly    74 EIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGY 138
            .:.:|...|. |:.|.....|    ||::||....:.||..|..:|.:..|.||:|        |
Mouse    62 GVNINVEASK-NKSKASTKLH----VGNISPTCTNQELRAKFEEYGPVIECDIVKD--------Y 113

  Fly   139 AFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPGNGSGV-- 201
            |||...:..:|..||:.::......:.:....||.:|  ...|..|...|....|..|:.|..  
Mouse   114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL--RTAPGMGDQSGCYRCGKEGHWSKECP 176

  Fly   202 --KGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKF 264
              :..:...|.|.||:......|.|..|:..::..:|       .:|.:...:.::.:.:..:..
Mouse   177 VDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMYYND-------AYGALDYYKRYRVRSYEAVAA 234

  Fly   265 VTKEAAAHAIEHT--HNSEVHGNLVKCFWGKENGG-------DNSANNLNAAAAAAAASAN---- 316
            ....:|.:..|.|  |..:|..:.|.......:..       .||.:...:||.|||||::    
Mouse   235 AAAASAYNYAEQTMSHLPQVQSSAVPSHLNSTSVDPYDRHLLQNSGSAATSAAMAAAASSSYYGR 299

  Fly   317 ----VAAVAAANAAVAAGAGMPGQMMTQQQIAAAT 347
                :...||...||..|.|. |......|.:|||
Mouse   300 DRSPLRRNAAVLPAVGEGYGY-GPESEMSQASAAT 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 19/70 (27%)
RRM2_TIA1_like 96..170 CDD:409789 19/73 (26%)
RRM_SF 221..292 CDD:473069 11/72 (15%)
Rbm4bNP_079993.2 RRM1_RBM4 2..68 CDD:410018 19/70 (27%)
RRM2_RBM4 78..144 CDD:410019 20/77 (26%)
PTZ00368 <145..>181 CDD:173561 9/37 (24%)
ZnF_C2HC 161..176 CDD:197667 4/14 (29%)
Interaction with TNPO3. /evidence=ECO:0000250 196..357 31/146 (21%)

Return to query results.
Submit another query.