DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and myef2

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001025455.2 Gene:myef2 / 641483 ZFINID:ZDB-GENE-051120-114 Length:553 Species:Danio rerio


Alignment Length:119 Identity:38/119 - (31%)
Similarity:54/119 - (45%) Gaps:12/119 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWI 161
            |||.:|..::..:.|:|.|...|.:....:..|... ||:|...|:|.:..||..||...|||.:
Zfish   214 IFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDG-KSRGMGTVTFEQPLEAVQAISMFNGQML 277

  Fly   162 GSRSIRTNWSTRKLPP------PREPSKGGGQGG-GMGGGPG----NGSGVKGS 204
            ..|.:......:.|||      .:.|....|.|| |||.|||    |.:.:.||
Zfish   278 FDRQMHVKMDDKSLPPDDFRPVEKSPQLPRGLGGIGMGLGPGGQPINANCLSGS 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 22/72 (31%)
RRM_SF 221..292 CDD:473069
myef2NP_001025455.2 RRM1_MYEF2 82..157 CDD:410059
RRM2_MYEF2 212..287 CDD:410061 22/73 (30%)
RRM3_MYEF2 477..553 CDD:410063
Blue background indicates that the domain is not in the aligned region.

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