Protein Alignment Rox8 and a1cf

DIOPT Version :10

• Sequence 1: NP_732944.2
• Gene: Rox8 / 42848
• FlyBaseID: FBgn0005649
• Length: 470
• Species: Drosophila melanogaster
• Sequence 2: XP_068080798.1
• Gene: a1cf / 562916
• ZFINID: ZDB-GENE-060824-3
• Length: 594
• Species: Danio rerio
• Alignment Length: 505
• Identity: 105/505 - (20%)
• Similarity: 169/505 - (33%)
• Gaps: 159/505 - (31%)

  Fly     9 LYVGNLDSSVSEDLLIALFS--TMGPVKSCKIIREPG------NDPYAFIEYSNYQAATTALTAM 65
            |:||.:..:...:.::|...  |.|.:   .:|..|.      |..:||:||..::||     ||
Zfish   138 LFVGGIPKTKKREEILAEMKKVTDGVL---DVIVYPSAADKAKNRGFAFVEYETHRAA-----AM 194

  Fly    66 NKRLFLEKEIK-------VNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPF--GEI 121
            .:|..|...|:       |:||.......:..:::...::|.:|......||:.:.|...  |.:
Zfish   195 ARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMATVKILYVRNLMLPTTEETIEKEFNSIKPGAV 259

  Fly   122 SNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREP----S 182
            ...:.:||        ||||.|.::.:|.||:.|:||:.|....|..   |...|..::.    :
Zfish   260 ERVKKIRD--------YAFVHFSQREDAINAMNALNGKVIDGSPIEV---TLAKPVDKDSYVRYT 313

  Fly   183 KG-GGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFG 246
            :| ||:||.:         ::|...:|..::|:.|:     .|.|                   .
Zfish   314 RGTGGRGGTV---------LQGDYAYTVGQMYDPSA-----AYLG-------------------A 345

  Fly   247 PIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENGGDNSANNLNAAAAAA 311
            ||               |.    |.||         :..:...|......|..|...|....:..
Zfish   346 PI---------------FY----APHA---------YATIPNQFRFPSTKGQMSTRGLVRTPSVR 382

  Fly   312 AASANVAAVAA-----------ANAAVAAGAGMPGQMMTQQQIAAATGAAIPGQMMTPQQIAAQY 365
            ....||...||           |.|.|..|.| ..|:.|.::........:||..:||.......
Zfish   383 EIYMNVPVGAAGVRGLGGRGYLAYAGVGRGCG-TYQLKTDKRPDDKLYDLLPGMELTPMNPVTLK 446

  Fly   366 PYAYQ----------QMGYWYPP-------------------ATYPTTQMQTQYMQQGYYPYAYP 401
            |...:          |...|..|                   .|.|....|        ||..:|
Zfish   447 PQGIKHAPQILEDICQKNNWGQPVYQLHSAIGPDQRQLFLYKVTIPALATQ--------YPNIHP 503

  Fly   402 -TSAQQAGGVPCIQFSAAGYRMVPPNVAWGVPGTVVPGVTAAAASAAAAA 450
             |.|:....:...:..||.:.:       .:.|....|..|:||:|.|||
Zfish   504 FTPAKLCASMDEAKLHAAEHTL-------QILGVQTEGADASAAAAVAAA 546

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rox8	NP_732944.2	RRM1_TIA1_like	9..80	CDD:409788	21/85 (25%)
		RRM2_TIA1_like	96..170	CDD:409789	21/75 (28%)
		RRM_SF	221..292	CDD:473069	9/70 (13%)
a1cf	XP_068080798.1	hnRNP-R-Q	6..594	CDD:273732	105/505 (21%)