DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and cirbp

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001017228.1 Gene:cirbp / 549982 XenbaseID:XB-GENE-492781 Length:166 Species:Xenopus tropicalis


Alignment Length:138 Identity:44/138 - (31%)
Similarity:72/138 - (52%) Gaps:20/138 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWI 161
            :|||.|:.|...|:|.:.|:.:|:::...:|:|..:.:|:|:.||:|....:|::|:.||||:.:
 Frog     8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSV 72

  Fly   162 GSRSIRTNWSTRKLPPPREPSKGGGQG------GGMGGGPGNGSGVKGSQRHTFEEVYNQSSPTN 220
            ..|.||.:.:.:.....|...:||..|      ||.|.|.|...|..||.|  ||   |:|    
 Frog    73 DGRQIRVDQAGKSSNDRRGGYRGGSSGGRGFFRGGRGRGGGGDRGYGGSSR--FE---NRS---- 128

  Fly   221 TTVYCGGF 228
                 ||:
 Frog   129 -----GGY 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 25/72 (35%)
RRM_SF 221..292 CDD:473069 2/8 (25%)
cirbpNP_001017228.1 RRM_CIRBP_RBM3 6..85 CDD:409883 25/76 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 68..166 24/78 (31%)
Blue background indicates that the domain is not in the aligned region.

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