DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and Tra2a

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001119768.2 Gene:Tra2a / 500116 RGDID:1562563 Length:282 Species:Rattus norvegicus


Alignment Length:107 Identity:40/107 - (37%)
Similarity:59/107 - (55%) Gaps:10/107 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 LREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRK- 174
            |||.|:.:|.:|...:|.|..|.:|:|:|||.|.:..:::.|::..||..:..|.||.::|..| 
  Rat   133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKR 197

  Fly   175 --LPPP-----REPSKGGGQGGGMGGGPGNGSGVKGSQRHTF 209
              .|.|     |....|||.|||.|||.|.|.|  |.:|.::
  Rat   198 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGG--GRRRDSY 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 21/58 (36%)
RRM_SF 221..292 CDD:473069
Tra2aNP_001119768.2 RRM_TRA2 116..195 CDD:409798 22/61 (36%)
Blue background indicates that the domain is not in the aligned region.

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