DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and rbm34

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001004890.1 Gene:rbm34 / 448232 XenbaseID:XB-GENE-5895036 Length:412 Species:Xenopus tropicalis


Alignment Length:252 Identity:65/252 - (25%)
Similarity:106/252 - (42%) Gaps:67/252 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCK---IIREPGN-----------------DPYAFIE 51
            :|::||||.:..::.:|.:||...|.::|.:   :.|...|                 :..|:|.
 Frog   168 RTVFVGNLPADYTKQMLKSLFKEFGHIESMRFRSVARAEANLSRKVAAIQRKVHPKRKNINAYIV 232

  Fly    52 YSNYQAATTALTAMNKRLFLEKEIKVNWA-TSPGNQPKTDI----SSHHH---IFVGDLSPEIET 108
            :.:..:|:.||             |.|.| ...|...:.||    |||.:   .|:|:|..|||.
 Frog   233 FKDESSASQAL-------------KRNGAEVGSGFHIRVDIASKRSSHDNKRSAFIGNLPYEIEE 284

  Fly   109 ETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQ---AMNGQWIGSRSIR--- 167
            |.:|:.|:..|::...||:||..|...||:.:|.|    |:.:|:|   .:|...:..|.||   
 Frog   285 EAVRDHFSECGKVQGVRIIRDQKTGIGKGFGYVLF----ESADAVQLALKLNNSELSGRKIRVKR 345

  Fly   168 ----------TNWST---RKLPPPRE--PSKGGGQGGGMGG-GPGNGSGVKGSQRHT 208
                      ||.|:   :||...::  |.||....|.... |.....|.|..::.|
 Frog   346 SLTAEAAQKSTNKSSDFKKKLDTLKQAKPLKGNSFVGETAEVGKVKNKGHKNKKKKT 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 18/90 (20%)
RRM2_TIA1_like 96..170 CDD:409789 27/92 (29%)
RRM_SF 221..292 CDD:473069
rbm34NP_001004890.1 RRM1_RBM34 168..259 CDD:409828 21/103 (20%)
RRM2_RBM34 272..344 CDD:409829 26/75 (35%)
Blue background indicates that the domain is not in the aligned region.

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