DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rox8 and trv

DIOPT Version :9

Sequence 1:NP_001262897.1 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster


Alignment Length:508 Identity:191/508 - (37%)
Similarity:244/508 - (48%) Gaps:143/508 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 STMGPVKS--CKI-IREPGNDP----YAFIEYSNYQAATTALTAMNKRL--------FLEKEIKV 77
            |.|.|.:|  |.: .|.|...|    |......:..||..:....|.:|        .:|..::.
  Fly   202 SPMMPPQSFGCPLPSRTPATPPLPGTYRVQSLKSAAAAAVSAYQRNGKLPRNLPALRAMEMALRT 266

  Fly    78 N-WATSP-----------------GNQPKTD----------ISSHHHIFVGDLSPEIETETLREA 114
            | :||.|                 |.|...|          :....||||||||.||||:.||||
  Fly   267 NSFATPPAPHSLPLPPPHAARTEGGGQDMEDSDEEMEYMPPLHKQFHIFVGDLSSEIETQQLREA 331

  Fly   115 FAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPR 179
            |.||||||:||:||||.|:|||||.||||:||:|||:||.||||||:|||||||||:|||.|..:
  Fly   332 FTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASK 396

  Fly   180 EPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPP--NVISDDLMHKHF 242
            |..|                      ..||:||||||||:|.|||.||...  ..:|::::.|.|
  Fly   397 ENIK----------------------PLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTF 439

  Fly   243 VQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENGGDNSANNLNAA 307
            ..:|.||::|||||||::|::|.|||||.|||...||:|::...|||.||||:|..|:|..:   
  Fly   440 APYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKESGDPNNAQTI--- 501

  Fly   308 AAAAAASANVAAVAAANAAVAAGAGMPGQMMTQQQIAAATGAAIPGQMMTPQQIAAQYPYAYQQM 372
                       |..|.|:|.||.||.|      ..:.||..||..|     ||:||        .
  Fly   502 -----------ATQALNSAAAAAAGFP------YGVGAAAAAAAYG-----QQLAA--------T 536

  Fly   373 GYWYPPA-TYPTTQ---------------MQTQYMQ--QGY-------YPYAY-------PTSAQ 405
            |.||.|. |||.:.               :|.|::|  |||       |...|       |.:.|
  Fly   537 GCWYSPTPTYPASSATAAAVTPAAASAAAVQNQFLQGIQGYHFGQYGGYQQGYMGMGVQIPATWQ 601

  Fly   406 QAGGVPCIQFSAAGYRMVPPNVAWGVPGTVVPGVTAAAASAAAAANGSLAPQM 458
               ||...|.|.|      ..:|.||.||.:|  .||...|.......::||:
  Fly   602 ---GVTQAQISPA------QQLATGVAGTAIP--QAAGVVAYPIQQFQVSPQV 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_001262897.1 ELAV_HUD_SF 5..274 CDD:273741 125/290 (43%)
RRM1_TIA1_like 9..80 CDD:240798 15/67 (22%)
RRM2_TIA1_like 96..170 CDD:240799 59/73 (81%)
RRM3_TIA1_like 221..294 CDD:240800 36/74 (49%)
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:240799 59/73 (81%)
RRM3_TIA1_like 416..491 CDD:240800 36/74 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I3083
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 189 1.000 Inparanoid score I1394
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D100171at50557
OrthoFinder 1 1.000 - - FOG0000924
OrthoInspector 1 1.000 - - mtm1150
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10352
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X831
88.070

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