Protein Alignment Rox8 and CstF64

DIOPT Version :9

• Sequence 1: NP_001262897.1
• Gene: Rox8 / 42848
• FlyBaseID: FBgn0005649
• Length: 470
• Species: Drosophila melanogaster
• Sequence 2: NP_477453.1
• Gene: CstF64 / 42239
• FlyBaseID: FBgn0027841
• Length: 419
• Species: Drosophila melanogaster
• Alignment Length: 481
• Identity: 93/481 - (19%)
• Similarity: 165/481 - (34%)
• Gaps: 168/481 - (34%)

  Fly     1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKII--REPGNDP-YAFIEYSNYQAATTAL 62
            ||:|. ::::|||:....:|:.|..:||.:|||.|.|::  ||.|... :.|.||.:.:.|.:|:
  Fly    11 MDKSM-RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAM 74

  Fly    63 TAMN------------------KRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETE 109
            ..:|                  .|:.:::.::.....:|..:|...          :.:||:.|:
  Fly    75 RNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEP----------EDAPELITK 129

  Fly   110 TL-----REAFAPFGEISNCRIVRDPHTMKSK-------GYAFVSFVKKAEAENAIQAMNGQWIG 162
            |:     .:.:....::..| ||.:|...:..       .||.:      :|...::.::.|
  Fly   130 TVASLPPEQMYELMKQMKLC-IVSNPSEARQMLMLNPQLAYALL------QAMVVMRIVDPQ--- 184

  Fly   163 SRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEV----YNQSSPTNTTV 223
             :::...:...::||.        .||....||||.: :.|.|:...::|    ..|.:|.....
  Fly   185 -QALGMLFKANQMPPV--------LGGNPHQGPGNHT-MMGQQQVPQQQVQIPQQQQQAPQPPMP 239

  Fly   224 YCG-GFPPNVISDDLMHKHFVQFGPI-QDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNL 286
            ..| |||.||..:|: ....|..||: .|.|:.
  Fly   240 VPGPGFPANVHPNDI-DLRMVPGGPMPMDPRMM-------------------------------- 271

  Fly   287 VKCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAANAAVAAGAGMPGQMMTQQQIAAATGAAI 351
                                                       |.||      .|.:.|:....:
  Fly   272 -------------------------------------------GRGM------DQDLRASLPNPV 287

  Fly   352 PGQMMTPQQIAAQYPYAYQQMGYWYPPATYPTTQM--------------QTQYMQQGYYPYAYPT 402
            |..:|.| :..||.|...||.....|||.||:...              |.|...|| .|.|.|.
  Fly   288 PPPLMDP-RARAQMPPQQQQGVPQAPPAPYPSDPRQRPMDPRLRAGPGPQQQAPPQG-IPQAPPP 350

  Fly   403 SAQQAGGVPCIQFSAAGYRMVPPNVA 428
            :.||......:|.....:.::|.:.:
  Fly   351 TQQQQAAAQQLQSRLGAHGVLPSDAS 376

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rox8	NP_001262897.1	ELAV_HUD_SF	5..274	CDD:273741	61/307 (20%)
		RRM1_TIA1_like	9..80	CDD:240798	22/91 (24%)
		RRM2_TIA1_like	96..170	CDD:240799	12/85 (14%)
		RRM3_TIA1_like	221..294	CDD:240800	12/74 (16%)
CstF64	NP_477453.1	RRM	<13..>112	CDD:223796	23/99 (23%)
		RRM_CSTF2_CSTF2T	18..92	CDD:241115	21/73 (29%)
		CSTF2_hinge	112..190	CDD:291025	14/98 (14%)
		CSTF_C	377..416	CDD:291002	93/481 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0724
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.900