Protein Alignment Rox8 and srsf1a

DIOPT Version :9

• Sequence 1: NP_001262897.1
• Gene: Rox8 / 42848
• FlyBaseID: FBgn0005649
• Length: 470
• Species: Drosophila melanogaster
• Sequence 2: XP_005157471.1
• Gene: srsf1a / 406288
• ZFINID: ZDB-GENE-040426-1950
• Length: 257
• Species: Danio rerio
• Alignment Length: 199
• Identity: 59/199 - (29%)
• Similarity: 90/199 - (45%)
• Gaps: 31/199 - (15%)

  Fly    92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKG---YAFVSFVKKAEAENAI 153
            |:...|:||:|.|:|.|:.:.:.|..:|.|      ||......:|   :|||.|....:||:|:
Zfish    12 SNDCRIYVGNLPPDIRTKDVEDVFYKYGAI------RDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

  Fly   154 QAMNGQWIGSRSIRTNWSTRKLPPPREPSKG---GGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQ 215
            .|.:|.......:|..:       ||. .:|   ||.|||.|||.|.|.|..|:.|..:
Zfish    71 YARDGYDYDGYRLRVEF-------PRS-GRGMGRGGFGGGGGGGGGGGGGGGGAPRGRY------ 121

  Fly   216 SSPTNTTVY---CGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHT 277
            ..|:..:.|   ..|.||:....|| ..|..:.|.:....||:| |...::||.||...:|:...
Zfish   122 GPPSRRSEYRVIVSGLPPSGSWQDL-KDHMREAGDVCYADVFRD-GTGVVEFVRKEDMTYAVRKL 184

  Fly   278 HNSE 281
            .|::
Zfish   185 DNTK 188

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rox8	NP_001262897.1	ELAV_HUD_SF	5..274	CDD:273741	57/190 (30%)
		RRM1_TIA1_like	9..80	CDD:240798
		RRM2_TIA1_like	96..170	CDD:240799	23/76 (30%)
		RRM3_TIA1_like	221..294	CDD:240800	18/64 (28%)
srsf1a	XP_005157471.1	RRM	<7..>87	CDD:223796	24/80 (30%)
		RRM1_SRSF1	16..89	CDD:241041	23/85 (27%)
		RRM	<123..>189	CDD:223796	19/68 (28%)
		RRM2_SRSF1_like	130..202	CDD:241045	18/61 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0724
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.900