Protein Alignment Rox8 and rbm39a

DIOPT Version :10

• Sequence 1: NP_732944.2
• Gene: Rox8 / 42848
• FlyBaseID: FBgn0005649
• Length: 470
• Species: Drosophila melanogaster
• Sequence 2: NP_001012304.1
• Gene: rbm39a / 406251
• ZFINID: ZDB-GENE-040426-2852
• Length: 523
• Species: Danio rerio
• Alignment Length: 366
• Identity: 82/366 - (22%)
• Similarity: 141/366 - (38%)
• Gaps: 91/366 - (24%)

  Fly     2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKII------REPGNDPYAFIEYSNYQAATT 60
            :|...:|::...|.:.:....|...||.:|.|:..:||      |..|   .|:||:.:..:...
Zfish   144 EERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKG---IAYIEFVDSTSVPL 205

  Fly    61 ALTAMNKRLF------LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFG 119
            |:....:||.      ...:.:.|.|.:..|..:...:....::||.|...|..:.||..|.|||
Zfish   206 AIGLSGQRLLGVPIIVQASQAEKNRAAALANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFG 270

  Fly   120 EISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSI-------RTNWSTRKLPP 177
            .|.:.:::.|..|.:||||.|::|.....|:.|::.:||..:..|.:       ||:.||.....
Zfish   271 RIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFL 335

  Fly   178 PREPSKGGGQGGGMGG--------GPGNGSGVKGSQRHTFEE------------------VYNQS 216
            ..:..:..|...|..|        ..|.|..:..:.:...:.                  .:|.:
Zfish   336 DNDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNIN 400

  Fly   217 SPTNTTV---------YC----GGFPPN---------VISDDLM---HKHFVQFGPIQDVRVFKD 256
            .|||..:         :|    ..|.||         .|.||::   :||    |.:  :.::.|
Zfish   401 VPTNQALNLPSQPIATHCFQLSNMFNPNSENDHGWEIEIQDDVIEECNKH----GGV--IHIYVD 459

  Fly   257 K----GFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGK 293
            |    |..::|..|..||..|:     |.:||   :.|.||
Zfish   460 KKSAEGNVYVKCPTIPAAMAAV-----SALHG---RWFGGK 492

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rox8	NP_732944.2	RRM1_TIA1_like	9..80	CDD:409788	17/82 (21%)
		RRM2_TIA1_like	96..170	CDD:409789	26/80 (33%)
		RRM_SF	221..292	CDD:473069	22/99 (22%)
rbm39a	NP_001012304.1	SF-CC1	91..511	CDD:273721	82/366 (22%)