DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and srsf9

DIOPT Version :9

Sequence 1:NP_001262897.1 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001299828.1 Gene:srsf9 / 405835 ZFINID:ZDB-GENE-040426-2397 Length:245 Species:Danio rerio


Alignment Length:189 Identity:47/189 - (24%)
Similarity:79/189 - (41%) Gaps:23/189 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 SHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMN 157
            |...|:||:|..:::...:.:.|..:|:|.:..:..:..|:.   :|||.|....:||:|:...|
Zfish     2 SDGRIYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIP---FAFVRFEDPRDAEDAVFGRN 63

  Fly   158 GQWIGSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSSPTNTT 222
            |...|...:|..:      |....||..|..||.|||...|.....::|..|.            
Zfish    64 GYGFGDCKLRVEY------PRSSGSKFSGPAGGGGGGGPRGRFGPPTRRSEFR------------ 110

  Fly   223 VYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSE 281
            |...|.||.....|| ..|..:.|.:....|.:| |...::|:.:|...:|:....::|
Zfish   111 VIVTGLPPTGSWQDL-KDHMREAGDVCFADVQRD-GEGVVEFLRREDMEYALRRLDSTE 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_001262897.1 ELAV_HUD_SF 5..274 CDD:273741 45/180 (25%)
RRM1_TIA1_like 9..80 CDD:240798
RRM2_TIA1_like 96..170 CDD:240799 19/73 (26%)
RRM3_TIA1_like 221..294 CDD:240800 15/61 (25%)
srsf9NP_001299828.1 RRM <1..>76 CDD:223796 20/76 (26%)
RRM1_SRSF9 5..76 CDD:241042 19/73 (26%)
RRM_SF 109..184 CDD:302621 16/73 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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