DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and Rbm39

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:XP_006235393.1 Gene:Rbm39 / 362251 RGDID:1310071 Length:530 Species:Rattus norvegicus


Alignment Length:431 Identity:85/431 - (19%)
Similarity:148/431 - (34%) Gaps:106/431 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 SPGNQPKTDISSHHH----IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVS 142
            ||..:|..:::....    :|...|:..|....|.|.|:..|::.:.|::.|.::.:|||.|:|.
  Rat   136 SPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVE 200

  Fly   143 FVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPP-------REPSKGGGQGGGMGGGPGNGSG 200
            ||..:....|| .:.||             |.|..|       .|.::.......:      ..|
  Rat   201 FVDVSSVPLAI-GLTGQ-------------RVLGVPIIVQASQAEKNRAAAMANNL------QKG 245

  Fly   201 VKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKD------KGF 259
            ..|..|                :|.|....| |::|::...|..||.|:.:::..|      ||:
  Rat   246 SAGPMR----------------LYVGSLHFN-ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGY 293

  Fly   260 SFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAAN 324
            .||.|...|.|..|:|..:..|:.|..:|            ..::.....|::||:.:.:.....
  Rat   294 GFITFSDSECAKKALEQLNGFELAGRPMK------------VGHVTERTDASSASSFLDSDELER 346

  Fly   325 AAVAAGAGMPGQMMTQQQIAAATGAAIPGQMMTPQQIAAQYPY-AYQQMGYWYPPATYPTTQMQT 388
            ..:  ..|..|::....::|..||..||.......|::....: |..:..:        ...:||
  Rat   347 TGI--DLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSF--------VIDLQT 401

  Fly   389 QYMQQGYYPYAYPTSAQQAGGVPCIQFSAAGYRMVPPNVAWGVP------------GTVV----- 436
            :..||.........::.|.....|.|.|..........|.|...            |.|:     
  Rat   402 RLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVD 466

  Fly   437 ------------PGVTAAAASAAAAANGSLAPQMMYSAAMP 465
                        |.:.||.|:..|......|.:|:.:|.:|
  Rat   467 KNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 20/77 (26%)
RRM_SF 221..292 CDD:473069 22/76 (29%)
Rbm39XP_006235393.1 SF-CC1 46..518 CDD:273721 85/431 (20%)
Blue background indicates that the domain is not in the aligned region.

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