DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rox8 and Tial1

DIOPT Version :9

Sequence 1:NP_001262897.1 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001013211.1 Gene:Tial1 / 361655 RGDID:1595845 Length:392 Species:Rattus norvegicus


Alignment Length:472 Identity:181/472 - (38%)
Similarity:235/472 - (49%) Gaps:112/472 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIRE------------------PGNDPYA 48
            |:.||:|||||||...|:|.|::.|||.:||.||||:|.|                  ..||||.
  Rat     4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68

  Fly    49 FIEYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLRE 113
            |:|:..::.|..||.|||.|..|.||:||||||:|.:| |.|.|:|.|:|||||||||.||.::.
  Rat    69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNHFHVFVGDLSPEITTEDIKS 132

  Fly   114 AFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPP 178
            ||||||:||:.|:|:|..|.|||||.||||..|.:|||||..|.|||:|.|.|||||:|||.|.|
  Rat   133 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP 197

  Fly   179 REPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFV 243
            :...:                  ..:::..||:|.|||||.|.||||||.... ::|.||.:.|.
  Rat   198 KSTQE------------------TNTKQLRFEDVVNQSSPKNCTVYCGGIASG-LTDQLMRQTFS 243

  Fly   244 QFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENGGDNSANNLNAAA 308
            .||.|.::|||.:||:||::|.|.|:|||||...:.:.:.|::|||:||||:             
  Rat   244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES------------- 295

  Fly   309 AAAAASANVAAVAAANAAVAAGAGMPGQMMTQQQIAAATGAAIPGQMMTPQQIAAQYPYAYQQMG 373
                                     |......||:                        .|.|.|
  Rat   296 -------------------------PDMTKNFQQV------------------------DYSQWG 311

  Fly   374 YWYPPATYPTTQMQTQYMQQG-----YYPYAYPTSAQQAGGVPCIQFSA--AGYRMVPPNVAWGV 431
            .|  ...|...|...|||..|     |..|..|.: ||..||.....:|  .|:...||.  ...
  Rat   312 QW--SQVYGNPQQYGQYMANGWQVPPYGVYGQPWN-QQGFGVDQSPSAAWMGGFGAQPPQ--GQA 371

  Fly   432 PGTVVPGVTAAAASAAA 448
            |..|:|....|....|:
  Rat   372 PPPVIPPPNQAGYGMAS 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_001262897.1 ELAV_HUD_SF 5..274 CDD:273741 141/286 (49%)
RRM1_TIA1_like 9..80 CDD:240798 39/88 (44%)
RRM2_TIA1_like 96..170 CDD:240799 48/73 (66%)
RRM3_TIA1_like 221..294 CDD:240800 34/72 (47%)
Tial1NP_001013211.1 RRM1_TIAR 10..107 CDD:410028 45/97 (46%)
RRM2_TIAR 113..192 CDD:410029 51/78 (65%)
RRM3_TIAR 222..294 CDD:241064 34/72 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I6881
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H87796
Inparanoid 1 1.050 304 1.000 Inparanoid score I2571
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1066369at2759
OrthoFinder 1 1.000 - - FOG0000924
OrthoInspector 1 1.000 - - otm44540
orthoMCL 1 0.900 - - OOG6_103013
Panther 1 1.100 - - O PTHR10352
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X831
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.830

Return to query results.
Submit another query.