Protein Alignment Rox8 and Secp43

DIOPT Version :10

• Sequence 1: NP_732944.2
• Gene: Rox8 / 42848
• FlyBaseID: FBgn0005649
• Length: 470
• Species: Drosophila melanogaster
• Sequence 2: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Alignment Length: 246
• Identity: 67/246 - (27%)
• Similarity: 117/246 - (47%)
• Gaps: 55/246 - (22%)

  Fly     9 LYVGNLDSSVSEDLLIALFSTMG--PVKSCKIIR-----EPGNDPYAFIEYSNYQAATTALTAMN 66
            |::|:|:|.::|:.:||.|..||  |. :.:::|     ||..  |.|:   |:.:...||.||:
  Fly     8 LWMGSLESYMTENFIIAAFRKMGEDPT-TVRLMRNKYTGEPAG--YCFV---NFISDDHALDAMH 66

  Fly    67 KRLFLEKEIKVNWATSPGNQP----KTDISSHHH----------IFVGDLSPEIETETLREAF-A 116
                     |:|....||..|    :.:.:|:.:          ::|||||.:::...|.:.| :
  Fly    67 ---------KLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSS 122

  Fly   117 PFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQ-WIGSRSIRTNWSTRKLPPPRE 180
            .|..|...:::.|.... ||||.||.|..:.|.::|:..|||. .:|::.|:.   ...:|.|:.
  Fly   123 KFTSIKTAKVILDSLGF-SKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKI---CNAVPKPKS 183

  Fly   181 PSKGGGQGGGMGGGP---GNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGF 228
            .     .||.:|.|.   |.|||:..:....:.:.|:   ||:|  |..|:
  Fly   184 E-----LGGAVGEGNTNYGYGSGMTAAGGTDYSQYYD---PTST--YWQGY 224

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rox8	NP_732944.2	RRM1_TIA1_like	9..80	CDD:409788	23/77 (30%)
		RRM2_TIA1_like	96..170	CDD:409789	24/85 (28%)
		RRM_SF	221..292	CDD:473069	3/8 (38%)
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:410022	27/96 (28%)
		RRM2_SECp43_like	99..178	CDD:409781	24/82 (29%)
		Trnau1ap	210..330	CDD:465438	6/20 (30%)