DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and hnrnpa0b

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_999871.1 Gene:hnrnpa0b / 334222 ZFINID:ZDB-GENE-030131-6154 Length:314 Species:Danio rerio


Alignment Length:231 Identity:66/231 - (28%)
Similarity:97/231 - (41%) Gaps:48/231 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP------YAFIEYSNYQAATTALTAM-- 65
            |:||.|:...:.|.|.:.|...|.:..|.:::   ||.      :.|:.||..:.|..|:.|.  
Zfish    10 LFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQ---NDQLQRSRCFGFVTYSTSEEADAAMAARPH 71

  Fly    66 ---NKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIV 127
               .|.:    |:|...|.....:|:. ::....||||.|..:||.:.|.|.|:.||.|....::
Zfish    72 VVDGKNV----EVKRAVAREDAGRPEA-LAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVI 131

  Fly   128 RDPHTMKSKGYAFVSF-----------------------VKKAEAENAIQAMNGQWIGSRSIRTN 169
            .|..|.|.:|:.||.|                       ||||..:..|||..    |:|..|..
Zfish   132 TDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTKQEIQAAG----GARGGRGR 192

  Fly   170 WSTRKLPPPREPSKGGGQGGGMGG-GPGNGSGVKGS 204
            ...|.: ...:...|||:|||.|| |.|.|.|..|:
Zfish   193 GGGRGM-GRNQNGFGGGRGGGYGGYGGGYGGGYGGN 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 20/81 (25%)
RRM2_TIA1_like 96..170 CDD:409789 30/96 (31%)
RRM_SF 221..292 CDD:473069
hnrnpa0bNP_999871.1 RRM_SF 6..84 CDD:473069 20/80 (25%)
RRM_SF 100..179 CDD:473069 24/78 (31%)
HnRNPA1 263..294 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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