DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and hnrnpa0a

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_997810.2 Gene:hnrnpa0a / 323529 ZFINID:ZDB-GENE-030131-2249 Length:305 Species:Danio rerio


Alignment Length:241 Identity:63/241 - (26%)
Similarity:104/241 - (43%) Gaps:24/241 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIRE---PGNDPYAFIEYSNYQAATTALTA 64
            |:|...|:||.|:...::|.|...|...|.:..|.:::.   ..:..:.|:.||:...|.:|::|
Zfish     6 ENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70

  Fly    65 MNKRLFLEK-EIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVR 128
            ....|.... |:|...|.....:|:. ::....||:|.|..:||.:.||:.|:.||.:....::.
Zfish    71 RPHILDGNNVELKRAVAREDAGKPEA-LAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVIT 134

  Fly   129 DPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGG---- 189
            |..|.|.:|:.||.|.....|:.|: .:....|....:....:..|.......|:|||:||    
Zfish   135 DKETGKKRGFGFVYFEDNDSADKAV-VLKFHIINGHKVEVKKALTKQEMQAAGSRGGGRGGRGGG 198

  Fly   190 -GMG------GGPGNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGF 228
             |||      ||.|.|.|..|...:...:.|...       |.||:
Zfish   199 RGMGRPQNGYGGRGGGYGNYGGGGYGGNDGYGGG-------YGGGY 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 18/74 (24%)
RRM2_TIA1_like 96..170 CDD:409789 21/73 (29%)
RRM_SF 221..292 CDD:473069 3/8 (38%)
hnrnpa0aNP_997810.2 RRM1_hnRNPA0 8..86 CDD:409764 19/77 (25%)
RRM_SF 102..181 CDD:473069 22/79 (28%)
HnRNPA1 260..286 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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