DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and Cstf2t

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001101056.1 Gene:Cstf2t / 309338 RGDID:1310026 Length:629 Species:Rattus norvegicus


Alignment Length:231 Identity:60/231 - (25%)
Similarity:101/231 - (43%) Gaps:46/231 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKII--REPGNDP-YAFIEYSNYQAATTAL 62
            ||.|. ::::|||:....:|:.|..:||.:|.|.|.:::  ||.|... |.|.||.:.:.|.:|:
  Rat    11 MDRSL-RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74

  Fly    63 TAMNKRLFLEKEIKVNWATSPGNQ-------PKTDISSHHHIFVGD-LSPEIETETLREAFAP-- 117
            ..:|.|.|..:.::|:.|.|..|:       |...|....:   || :.||...|::..|.|.  
  Rat    75 RNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPY---GDPIDPEDAPESITRAVASLP 136

  Fly   118 ----FGEISNCRI-VRDPHTMKSK--------GYAFVS---FVKKAEAENAIQAMNGQWIGSRSI 166
                |..:...:: |::.|.....        .||.:.   .::..:.|.|::.::      |.|
  Rat   137 PEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILH------RKI 195

  Fly   167 RTNWSTRKLPPPREPSKGGGQGG----GMGGGPGNG 198
            ..   |..:|...:|..|.|.||    |..||||.|
  Rat   196 HV---TPLIPGKSQPVSGPGPGGPGGPGGPGGPGPG 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 23/73 (32%)
RRM2_TIA1_like 96..170 CDD:409789 16/92 (17%)
RRM_SF 221..292 CDD:473069
Cstf2tNP_001101056.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 27/83 (33%)
CSTF2_hinge 112..191 CDD:433869 14/81 (17%)
CSTF_C 585..625 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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