DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and mug28

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_593427.1 Gene:mug28 / 2543165 PomBaseID:SPAC343.07 Length:609 Species:Schizosaccharomyces pombe


Alignment Length:132 Identity:39/132 - (29%)
Similarity:60/132 - (45%) Gaps:23/132 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PYAFIEYSNYQAA-TTALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEI--E 107
            |..||.:.::|.: .|.:|                 .:|.:.|..|..   ::||.:|...|  .
pombe   389 PNPFISFPSFQTSYETTVT-----------------PTPTSTPTIDPC---NLFVKNLDDNIVGN 433

  Fly   108 TETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWST 172
            |:.|.|.|:.||.|.:|.:...|.|..||||.||||....||..||..:||...|.:.:..|::.
pombe   434 TQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAE 498

  Fly   173 RK 174
            ::
pombe   499 KR 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 6/34 (18%)
RRM2_TIA1_like 96..170 CDD:409789 29/75 (39%)
RRM_SF 221..292 CDD:473069
mug28NP_593427.1 RRM1_Mug28 19..102 CDD:410199
SF-CC1 <22..>192 CDD:273721
RRM2_Crp79_Mug28 272..345 CDD:410200
RRM3_Crp79_Mug28 416..507 CDD:410201 31/88 (35%)
Blue background indicates that the domain is not in the aligned region.

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