DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and hrb1

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_594207.3 Gene:hrb1 / 2542567 PomBaseID:SPAC328.05 Length:464 Species:Schizosaccharomyces pombe


Alignment Length:433 Identity:87/433 - (20%)
Similarity:137/433 - (31%) Gaps:116/433 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPG--NDPYAFIEYSNYQAATTALTAMNK 67
            |.:.:|||||...|....|......:|.|.:|:|:..|.  :...|.||||..:.|.||:..::.
pombe    75 QERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSN 139

  Fly    68 RLFLEKEIKVN----------------WATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFA 116
            :.|:.:.:.:.                .|:|.|...:.|    ..:|||:|...:..:.|::.|.
pombe   140 QKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPD----RQLFVGNLPYNVRWQDLKDLFR 200

  Fly   117 PFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTN-----------W 170
            ..|.:....|..:... :|:|...|......||.:|||.::......|::...           :
pombe   201 QAGSVIRADIQMNQEG-RSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKSKPY 264

  Fly   171 STRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSSPTNTTV------------ 223
            ||.                      |||.......:.|....|......||.|            
pombe   265 STH----------------------GNGYTFPAEMQMTTSSTYLPMLGANTQVEDLVYHAYPHGP 307

  Fly   224 -----YCGGFPPNVISDDLMHKHFVQFGPIQDVRVF-----KDKGFSFIKFVTKEAAAHAIEHTH 278
                 |.|.. |...||..:...|...|.:...|:.     :.|||..::|..:..||.:||   
pombe   308 CSDCIYVGNL-PWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIE--- 368

  Fly   279 NSEVHGNLVKCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAANAAVAAGAGMPGQMMTQQQI 343
                          |.||.......|..:.|..|        ....|.....:|:|....|    
pombe   369 --------------KLNGYRYGGRPLQLSYAHYA--------TPLPAVPTVLSGLPSVAYT---- 407

  Fly   344 AAATGAAIPGQMMTPQQIAAQYPYAYQQMGYWYPPATYPTTQM 386
                    |..|..|...:...|.::......|.|.:.|...|
pombe   408 --------PPVMHIPTTNSPLTPQSFTNSFLGYLPISMPVANM 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 21/88 (24%)
RRM2_TIA1_like 96..170 CDD:409789 17/84 (20%)
RRM_SF 221..292 CDD:473069 18/92 (20%)
hrb1NP_594207.3 PABP-1234 62..>385 CDD:130689 73/354 (21%)

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