DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and Ncl

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_036881.2 Gene:Ncl / 25135 RGDID:3153 Length:714 Species:Rattus norvegicus


Alignment Length:206 Identity:65/206 - (31%)
Similarity:97/206 - (47%) Gaps:22/206 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGN-----DPYAFIEYSNYQAATTALTA 64
            :.|||.:.||..|.:|:.|..:|      :....|:.|.|     ..|||||:::::.|..||.:
  Rat   488 ESKTLVLSNLSYSATEETLQEVF------EKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNS 546

  Fly    65 MNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRD 129
            .||.....:.|::. ...|...|.........:||..||.:...|||:|:|.  |.: ..|||.|
  Rat   547 CNKMEIEGRTIRLE-LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTD 607

  Fly   130 PHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGGGMG-- 192
            ..|..|||:.||.|..:.:|:.|.:||....|....:..:|:     .|:.....||:|||.|  
  Rat   608 RETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA-----KPKGEGGFGGRGGGRGGF 667

  Fly   193 GGPGNGSGVKG 203
            ||.|.|.|.:|
  Rat   668 GGRGGGRGGRG 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 21/75 (28%)
RRM2_TIA1_like 96..170 CDD:409789 26/73 (36%)
RRM_SF 221..292 CDD:473069
NclNP_036881.2 8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135
RRM1_NCL 312..386 CDD:409837
RRM2_NCL 395..470 CDD:409838
RRM3_NCL 489..561 CDD:409839 23/78 (29%)
RRM4_NCL 576..653 CDD:409840 28/84 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 646..714 14/38 (37%)
Blue background indicates that the domain is not in the aligned region.

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