DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and CSTF2T

DIOPT Version :9

Sequence 1:NP_001262897.1 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_056050.1 Gene:CSTF2T / 23283 HGNCID:17086 Length:616 Species:Homo sapiens


Alignment Length:463 Identity:90/463 - (19%)
Similarity:154/463 - (33%) Gaps:144/463 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKII--REPGNDP-YAFIEYSNYQAATTAL 62
            ||.|. ::::|||:....:|:.|..:||.:|.|.|.:::  ||.|... |.|.||.:.:.|.:|:
Human    11 MDRSL-RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74

  Fly    63 TAMNKRLFLEKEIKVNWATSPGNQ-------PKTDISSHHHIFVGD-LSPEIETETLREAFAP-- 117
            ..:|.|.|..:.::|:.|.|..|:       |...|....:   || :.||...|::..|.|.  
Human    75 RNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPY---GDPIDPEDAPESITRAVASLP 136

  Fly   118 ----FGEISNCRI-VRDPHTMKSK--------GYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTN 169
                |..:...:: |::.|.....        .||.:      :|:..::.|:.: |..:.:...
Human   137 PEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALL------QAQVVMRIMDPE-IALKILHRK 194

  Fly   170 WSTRKLPPPREPSKGGGQGGGMGG-GPGNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVI 233
            .....|.|      |..|...:.| |||.|.|:                       |.|  |||:
Human   195 IHVTPLIP------GKSQSVSVSGPGPGPGPGL-----------------------CPG--PNVL 228

  Fly   234 SDDL-----MHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGK 293
            .:..     ..:|..: .|::|:........                                  
Human   229 LNQQNPPAPQPQHLAR-RPVKDIPPLMQTPI---------------------------------- 258

  Fly   294 ENGGDNSANNLNAAAAAAAASANVAAVAAANAAVAAGAGMPG----------QMMTQQQIAAATG 348
             .||..:...:.||...|...:     .....|:....||||          ..|:..:.....|
Human   259 -QGGIPAPGPIPAAVPGAGPGS-----LTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRG 317

  Fly   349 AAIPGQMMTPQQIAAQYPY------------AYQQMGYWYPPATYPTTQMQTQYMQQGYYPYAYP 401
            ...||. :.|:.:....|.            ..:..||..||...|.....:.:..:|      |
Human   318 PVTPGG-LPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRG------P 375

  Fly   402 TSAQQAGG 409
            :|.:..||
Human   376 SSHEMRGG 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_001262897.1 ELAV_HUD_SF 5..274 CDD:273741 61/300 (20%)
RRM1_TIA1_like 9..80 CDD:240798 23/73 (32%)
RRM2_TIA1_like 96..170 CDD:240799 15/89 (17%)
RRM3_TIA1_like 221..294 CDD:240800 8/77 (10%)
CSTF2TNP_056050.1 RRM <16..>109 CDD:223796 27/92 (29%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 23/73 (32%)
CSTF2_hinge 113..191 CDD:291025 15/87 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..241 13/62 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 262..418 24/134 (18%)
9 X 5 AA tandem repeats of M-E-T-R-[AG] 418..462
9 X 5 AA tandem repeats of G-[AT]-G-[MI]-Q 505..549
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 542..573
CSTF_C 572..612 CDD:291002
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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