Sequence 1: | NP_001262897.1 | Gene: | Rox8 / 42848 | FlyBaseID: | FBgn0005649 | Length: | 470 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_056050.1 | Gene: | CSTF2T / 23283 | HGNCID: | 17086 | Length: | 616 | Species: | Homo sapiens |
Alignment Length: | 463 | Identity: | 90/463 - (19%) |
---|---|---|---|
Similarity: | 154/463 - (33%) | Gaps: | 144/463 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKII--REPGNDP-YAFIEYSNYQAATTAL 62
Fly 63 TAMNKRLFLEKEIKVNWATSPGNQ-------PKTDISSHHHIFVGD-LSPEIETETLREAFAP-- 117
Fly 118 ----FGEISNCRI-VRDPHTMKSK--------GYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTN 169
Fly 170 WSTRKLPPPREPSKGGGQGGGMGG-GPGNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVI 233
Fly 234 SDDL-----MHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGK 293
Fly 294 ENGGDNSANNLNAAAAAAAASANVAAVAAANAAVAAGAGMPG----------QMMTQQQIAAATG 348
Fly 349 AAIPGQMMTPQQIAAQYPY------------AYQQMGYWYPPATYPTTQMQTQYMQQGYYPYAYP 401
Fly 402 TSAQQAGG 409 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Rox8 | NP_001262897.1 | ELAV_HUD_SF | 5..274 | CDD:273741 | 61/300 (20%) |
RRM1_TIA1_like | 9..80 | CDD:240798 | 23/73 (32%) | ||
RRM2_TIA1_like | 96..170 | CDD:240799 | 15/89 (17%) | ||
RRM3_TIA1_like | 221..294 | CDD:240800 | 8/77 (10%) | ||
CSTF2T | NP_056050.1 | RRM | <16..>109 | CDD:223796 | 27/92 (29%) |
RRM_CSTF2_CSTF2T | 18..92 | CDD:241115 | 23/73 (32%) | ||
CSTF2_hinge | 113..191 | CDD:291025 | 15/87 (17%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 203..241 | 13/62 (21%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 262..418 | 24/134 (18%) | |||
9 X 5 AA tandem repeats of M-E-T-R-[AG] | 418..462 | ||||
9 X 5 AA tandem repeats of G-[AT]-G-[MI]-Q | 505..549 | ||||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 542..573 | ||||
CSTF_C | 572..612 | CDD:291002 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0724 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |