Protein Alignment Rox8 and rbm-39

DIOPT Version :10

• Sequence 1: NP_732944.2
• Gene: Rox8 / 42848
• FlyBaseID: FBgn0005649
• Length: 470
• Species: Drosophila melanogaster
• Sequence 2: NP_500025.1
• Gene: rbm-39 / 176922
• WormBaseID: WBGene00021921
• Length: 580
• Species: Caenorhabditis elegans
• Alignment Length: 478
• Identity: 96/478 - (20%)
• Similarity: 165/478 - (34%)
• Gaps: 145/478 - (30%)

  Fly     2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKII---REPGNDPYAFIEYSNYQAATTALT 63
            :|...:||.:..:........|...||.:|.|:..:||   |...:....::|:.:.::....|.
 Worm   165 EERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLA 229

  Fly    64 AMNKRLF----------LEKEIKVNWA-------TSPGNQPKTDISSHHHIFVGDLSPEIETETL 111
            ...:||.          .|:....|.:       .:|||:..|      |:.|.:|.|:|:.:.:
 Worm   230 LNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPT------HVLVENLHPKIDEKMI 288

  Fly   112 REAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLP 176
            |:.|..||.|....:..|.: .:::|:|.::|....:|:.:.:.:|...:..|.||.:.......
 Worm   289 RDIFESFGRIEKIDLEVDSN-RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQA 352

  Fly   177 PPREPSK-----------GGGQGGGMGGG----------PGNGSGVK--GSQRHTFEEVYNQSSP 218
            |..:..:           |..||..:|.|          .|.|||::  .|.:...:...:...|
 Worm   353 PAVKKEEASIHQRSLDDVGDRQGFSLGAGGRQQLMAKLAQGTGSGMELTASAQMAAQHAGHSQIP 417

  Fly   219 TNTT---VYCGGFPPNV---------ISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAA 271
            :..|   :....|.|:.         |.:|::.:.....|.:   .||.|||
 Worm   418 SIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGAL---HVFVDKG------------- 466

  Fly   272 HAIEHTHNSEVHGNL-VKCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAANAAVAA--GAGM 333
                    || .||: |||                            .::..|:.||:|  |...
 Worm   467 --------SE-QGNVYVKC----------------------------PSIVIAHQAVSALHGRWF 494

  Fly   334 PGQMMT-----------------QQQIAAATGAAIP-------GQMMTPQQIAAQY-PYAYQQMG 373
            .|:::|                 ..:|...|..|.|       ..::.||.||..| .|......
 Worm   495 SGKVITANYVPVNSYHDLFPDAVHARIVLTTRGAAPVVPIVPMVPVVPPQGIANGYGAYGMMAPA 559

  Fly   374 YWYPPATYPTTQMQTQYMQQGYY 396
            :..||.  |..|.|.||...|.|
 Worm   560 HGAPPP--PPPQQQGQYGGYGRY 580

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rox8	NP_732944.2	RRM1_TIA1_like	9..80	CDD:409788	15/83 (18%)
		RRM2_TIA1_like	96..170	CDD:409789	19/73 (26%)
		RRM_SF	221..292	CDD:473069	18/83 (22%)
rbm-39	NP_500025.1	SF-CC1	140..515	CDD:273721	77/409 (19%)