DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and rsp-3

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001370111.1 Gene:rsp-3 / 176688 WormBaseID:WBGene00004700 Length:258 Species:Caenorhabditis elegans


Alignment Length:247 Identity:59/247 - (23%)
Similarity:92/247 - (37%) Gaps:52/247 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
            |....::||:|..::..:.:.:.|..:|.|...    |..:.:...:|||.|....:||:|::|.
 Worm     6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAEDAVRAR 66

  Fly   157 NGQWIGSRSIRTNWSTRKLPPPREPS----------KG----GGQGGGMGGGPGNGSGVKGSQRH 207
            :|.....|.||..: ||.: .||.|.          :|    ||:|||.||||...:|.:     
 Worm    67 DGYEFDGRRIRVEF-TRGV-GPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYR----- 124

  Fly   208 TFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAH 272
                           |...|.||.....|| ..|....|.:....|.:| |...::|...|...:
 Worm   125 ---------------VIVEGLPPTGSWQDL-KDHMRDAGDVCYADVARD-GTGVVEFTRYEDVKY 172

  Fly   273 AIE-------HTHNSEVHGNLVK---CFWGKENGGDNSANNLNAAAAAAAAS 314
            |:.       .:|..|.....|:   ...|...||....:...:..|...||
 Worm   173 AVRKLDDTKFRSHEGETAYIRVREDNSSGGGSGGGGRDRSRSRSPRAERRAS 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 19/73 (26%)
RRM_SF 221..292 CDD:473069 17/80 (21%)
rsp-3NP_001370111.1 RRM1_SRSF1_like 10..80 CDD:409775 19/73 (26%)
RRM2_SRSF1_like 123..196 CDD:410013 17/94 (18%)
Blue background indicates that the domain is not in the aligned region.

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