DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and eif-3.G

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001263666.1 Gene:eif-3.G / 174346 WormBaseID:WBGene00001230 Length:262 Species:Caenorhabditis elegans


Alignment Length:160 Identity:40/160 - (25%)
Similarity:63/160 - (39%) Gaps:19/160 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VSEDLLIALFSTMGPVKSCKIIREPGND------PYAFIEYSNYQAATTALTAMNKRLFLEKEIK 76
            |.||...|..::....:.||     |||      ||..:...:.:|.....|        ||:..
 Worm   112 VQEDKQTAKTTSREHCRHCK-----GNDHWSTHCPYKVMYQLDEEADADKDT--------EKDRM 163

  Fly    77 VNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFV 141
            .......|.|...:.|..:...|.:|..|:..:.||:.|...|.:....|.||..|...||:|||
 Worm   164 AMGMRPDGRQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFV 228

  Fly   142 SFVKKAEAENAIQAMNGQWIGSRSIRTNWS 171
            :|..:.:|..||..:|...:....::..|:
 Worm   229 TFESRDDAARAIAELNDIRMYHMVLKVEWT 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 15/67 (22%)
RRM2_TIA1_like 96..170 CDD:409789 21/73 (29%)
RRM_SF 221..292 CDD:473069
eif-3.GNP_001263666.1 eIF3G 33..143 CDD:240597 10/35 (29%)
RRM_eIF3G_like 183..257 CDD:409842 21/73 (29%)
Blue background indicates that the domain is not in the aligned region.

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