DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rox8 and sup-46

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_492677.1 Gene:sup-46 / 172881 WormBaseID:WBGene00045383 Length:454 Species:Caenorhabditis elegans


Alignment Length:384 Identity:74/384 - (19%)
Similarity:124/384 - (32%) Gaps:131/384 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GPVKSCKIIREPGNDP--YAFIEYSNYQAATTALTAMNK-----RLFLEKEIK------------ 76
            |.|..|:::.:....|  .|.:|:...:.|...:..:.|     |..:.|||:            
 Worm    70 GEVAFCELLEDRNGKPKGNAVVEFETREGAEKCVENLQKFDWKGRTIIAKEIRDPNAFFRTIKTE 134

  Fly    77 --VNWATSPG-------NQPKTDIS-------------------SHH-------HIFVGDLSPEI 106
              :::.:..|       ..|..|:.                   .|:       .||:.:|:..:
 Worm   135 TGIDYLSRTGGGGAGGRGPPPKDLDRPTRTGTYDLFGLNMEFLRQHNIEPPLCERIFIANLAFNV 199

  Fly   107 ETETLREAFAPFGEIS--NCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWI-------- 161
            .|:.|.|.|...|:|:  :.||.::.   ||||...:.:....||..|:..:|||.:        
 Worm   200 GTDKLYEVFGMAGKITWMDFRIDKEG---KSKGVCVIQYTHPIEAVQAVSMLNGQRLFDRNLVVK 261

  Fly   162 -----------------GSRSIRTNWSTRKLP-----------------PPREPSKGGGQ---GG 189
                             |..||.........|                 .|..|..||.|   .|
 Worm   262 MDRFDKELEHKEGGLPRGLESIGMGLGAEGAPLSNVHGMFPGDASVPFTAPAAPFVGGPQVVSAG 326

  Fly   190 GMGG--------------GP-GNGSGVKGSQRHTFEE-----------VYNQSSPTNTTVYCGGF 228
            |.||              || |..:||.|:...||.:           :...::|..|.|.....
 Worm   327 GFGGVVEQANFARSVMNNGPFGGNAGVGGAGGATFAQPDVFGVNGAGGLAGAATPQATRVIIIRN 391

  Fly   229 PPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLV 287
            .|:..:..::......||.:..|.:.. .|.:.|:|.|.:.|..|....:.|.|.|.::
 Worm   392 LPSDYTWQIVRDRVRNFGEVDSVDMMA-PGAARIRFATFQDAERARAALYGSTVEGRMI 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 12/69 (17%)
RRM2_TIA1_like 96..170 CDD:409789 24/100 (24%)
RRM_SF 221..292 CDD:473069 15/67 (22%)
sup-46NP_492677.1 RRM_SF 47..120 CDD:473069 9/49 (18%)
PABP-1234 <70..>321 CDD:130689 45/253 (18%)
RRM2_hnRNPM_like 190..263 CDD:409820 21/75 (28%)
RRM_SF 387..452 CDD:409669 13/64 (20%)

Return to query results.
Submit another query.