| Sequence 1: | NP_001262897.1 | Gene: | Rox8 / 42848 | FlyBaseID: | FBgn0005649 | Length: | 470 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001293135.1 | Gene: | CSTF2 / 1478 | HGNCID: | 2484 | Length: | 597 | Species: | Homo sapiens |
| Alignment Length: | 409 | Identity: | 98/409 - (23%) |
|---|---|---|---|
| Similarity: | 154/409 - (37%) | Gaps: | 93/409 - (22%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAEN 151
Fly 152 AIQAMNGQWIGSRSIRT-NWSTRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQ 215
Fly 216 SSPTNTTVYCGGFPPNVISDDLMH--KHFVQFGPIQDVR--VFKDKGFSF--------IKFVTKE 268
Fly 269 AAAHAIEHTHN---------SEVHGNLVKCFWGKENGGDNSANNLNAAAAAAAASANV---AAVA 321
Fly 322 AANAAVAAGAGMPGQMMTQQQIAAATGAAIPGQMMTPQQIAAQY------PYAYQQ--------- 371
Fly 372 MGYWYP--PATYPTTQMQTQ----YMQQGYYPYAYPTSAQQAGGVP-----------CIQFSAAG 419
Fly 420 YRMVPPNVAWGVPGTVVPG 438 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Rox8 | NP_001262897.1 | ELAV_HUD_SF | 5..274 | CDD:273741 | 48/199 (24%) |
| RRM1_TIA1_like | 9..80 | CDD:240798 | |||
| RRM2_TIA1_like | 96..170 | CDD:240799 | 23/74 (31%) | ||
| RRM3_TIA1_like | 221..294 | CDD:240800 | 18/93 (19%) | ||
| CSTF2 | NP_001293135.1 | PABP-1234 | 4..352 | CDD:130689 | 89/375 (24%) |
| RRM_CSTF2_CSTF2T | 18..92 | CDD:241115 | 23/73 (32%) | ||
| CSTF2_hinge | 112..191 | CDD:373015 | 16/92 (17%) | ||
| PRK14718 | <412..>469 | CDD:173181 | |||
| CSTF_C | 553..593 | CDD:373006 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_COG0724 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| User_Submission | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.810 | |||||