DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and B52

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:XP_003436860.1 Gene:B52 / 1275942 VectorBaseID:AGAMI1_007388 Length:351 Species:Anopheles gambiae


Alignment Length:229 Identity:46/229 - (20%)
Similarity:80/229 - (34%) Gaps:54/229 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLEK 73
            :|||.|...|.|..|...|...|..:...|     .:.|.|:|:.:|:.|..|:..:|.:..|.:
Mosquito     6 VYVGGLPYGVRERDLERFFKGYGRTRDILI-----KNGYGFVEFEDYRDADDAVYELNGKELLGE 65

  Fly    74 EIKV----NWATSPGNQPKTD---------------------------ISSHHHIFVGDLSPEIE 107
            .:.|    ..|..|....:.|                           :.:.:.:.|.:||..:.
Mosquito    66 RVVVEPARGTARGPSGYRERDRYDRDRRGGRYDKYKSNSRNSSRYGPPLRTEYRLVVENLSTRVS 130

  Fly   108 TETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWST 172
            .:.|::.....||::    ..|.|..: |....|.|...::.:.||:.::...:..|.||     
Mosquito   131 WQDLKDYMRQAGEVT----YADAHKQR-KNEGVVEFATLSDMKTAIEKLDDTELNGRRIR----- 185

  Fly   173 RKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQR 206
              |...|      |:.|..|.|....|..:...|
Mosquito   186 --LVEDR------GRNGRNGRGRSRSSSSRSRSR 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 19/74 (26%)
RRM2_TIA1_like 96..170 CDD:409789 16/73 (22%)
RRM_SF 221..292 CDD:473069
B52XP_003436860.1 RRM1_SRSF4_like 5..74 CDD:409774 19/72 (26%)
RRM2_SRSF4_like 118..189 CDD:410012 17/82 (21%)
Blue background indicates that the domain is not in the aligned region.

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