DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rox8 and LOC1270935

DIOPT Version :10

Sequence 1:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster
Sequence 2:XP_309663.5 Gene:LOC1270935 / 1270935 VectorBaseID:AGAMI1_003918 Length:569 Species:Anopheles gambiae


Alignment Length:516 Identity:105/516 - (20%)
Similarity:160/516 - (31%) Gaps:186/516 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDESQPKT------------LYVGNLDSSVSEDLLIALFSTMGPV------KSCKIIREPGNDPY 47
            ::.|.|||            |.|..|....:|:.|...|.|.|.:      |..|..:..|   |
Mosquito    97 LENSTPKTKRIESRNRTTTDLIVLGLPWKTTEESLREYFETFGELLVVQIKKDSKTGQSKG---Y 158

  Fly    48 AFIEYSNYQAATTALTAMNKRLFLEK---EIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETE 109
            .||.::.::   :.:.|::||..::.   ::||     |.::.:|.......||:|.|:.:|.::
Mosquito   159 GFIRFARFE---SQMKALSKRHLIDSRWCDVKV-----PSSKDQTQHQMPSKIFLGRLTEDINSD 215

  Fly   110 TLREAFAPFGEISNCRIVR-----------DPHTMKS--------KGYAFVSFVKKAEAENAIQA 155
            .:|:.|:.:||:::..|.:           |||..:|        ||.:..........|:....
Mosquito   216 DIRDYFSKYGEVTDVFIPKPFRAFAFVTFIDPHVAQSLCGEDHLIKGTSVYVSTASPRPEHGRHH 280

  Fly   156 MNGQWIGSRSIRTNWSTR----------KLPPPREPSKGGGQGGGMGGGPGNGSGV-------KG 203
            ..||..|:.|   |:..|          ......:..:|||.|||.|||.|.|..|       ..
Mosquito   281 GKGQMGGNFS---NYDERGRGGGGSGVGGSSGANDYHRGGGGGGGGGGGGGGGHAVGPHVPAPNS 342

  Fly   204 SQRH-------------------------------TFEEVYNQSSPTNTTVYCGGFPPNV----- 232
            |..|                               .:.|...|:...|:.:..   .||:     
Mosquito   343 SYHHGSGGGSEGAGPGGYNNMQSGNGGGCSQQPIWNYNEYTAQNRQNNSNIES---MPNLQALGI 404

  Fly   233 ------------ISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGN 285
                        :...|...|....|                            .|...|...| 
Mosquito   405 NSSGPNGQRGGGVGGGLHGGHHAGMG----------------------------NHLSGSGGAG- 440

  Fly   286 LVKCFWGKENG--GDNSANNLNAAAAAAAASANV-------AAVAAA------------NAAVAA 329
                  |...|  |.|.|..:.|....||.:.|:       |.:|||            |.|..|
Mosquito   441 ------GSAPGGPGSNGAGVIGAHGGPAAGNMNLYQMPINPAIIAAALSQWSLIGNQMHNTAQGA 499

  Fly   330 GA-------GMPGQMMTQQQIAAATGAAIPGQMMTPQQIAAQYPY-AYQQMGYWYPPATYP 382
            |.       |.|||.........|.|...||....|...|::..| ::...|...|.|..|
Mosquito   500 GGPGGPGGPGAPGQANANVPGGPAGGPPGPGGAAGPGPGASEQEYLSWNGTGNGAPGAGVP 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 19/79 (24%)
RRM2_TIA1_like 96..170 CDD:409789 21/92 (23%)
RRM_SF 221..292 CDD:473069 8/87 (9%)
LOC1270935XP_309663.5 TDP43_N 11..85 CDD:465833
RRM1_TDP43 116..189 CDD:409760 19/83 (23%)
RRM2_TDP43 201..270 CDD:409761 16/68 (24%)
Blue background indicates that the domain is not in the aligned region.

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