DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment Rox8 and hnrnpm

DIOPT Version :9

Sequence 1:	NP_001262897.1	Gene:	Rox8 / 42848	FlyBaseID:	FBgn0005649	Length:	470	Species:	Drosophila melanogaster
Sequence 2:	XP_004911113.1	Gene:	hnrnpm / 100489127	XenbaseID:	XB-GENE-993962	Length:	744	Species:	Xenopus tropicalis

Alignment Length:	151	Identity:	38/151 - (25%)
Similarity:	63/151 - (41%)	Gaps:	21/151 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly    97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWI 161
            :||.:|...:..:.|:|.|...|.:....::.|... ||:|...|::.:..||..||...|||.:
Frog   245 VFVANLDYSVGWKKLKEVFGIAGTVVRADVLEDKDG-KSRGIGTVTYEQPIEAVQAISMFNGQPL 308

  Fly   162 GSRSIRTNWSTRKLP---------PPREPSKGGGQGGGM--GGGPGNGSGVKGSQRHTFEEVYNQ 215
            ..|.:......:.:|         ||:.|...||.|.|:  ||.|.:.:.::||         ..
Frog   309 FDRPMMVKMDDKSMPKGDLFPADRPPQLPRGLGGIGMGLGPGGQPIDANHLRGS---------TM 364

  Fly   216 SSPTNTTVYCGGFPPNVISDD 236
            ..|...::...||..|.:..|
Frog   365 GGPGGMSMDSMGFGMNKMGID 385

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rox8	NP_001262897.1	ELAV_HUD_SF	5..274	CDD:273741	38/151 (25%)
		RRM1_TIA1_like	9..80	CDD:240798
		RRM2_TIA1_like	96..170	CDD:240799	20/72 (28%)
		RRM3_TIA1_like	221..294	CDD:240800	4/16 (25%)
hnrnpm	XP_004911113.1	HnRNP_M	48..72	CDD:371586
		RRM1_hnRNPM	74..149	CDD:241101
		PABP-1234	76..>388	CDD:130689	38/151 (25%)
		RRM2_hnRNPM_like	245..318	CDD:240832	20/73 (27%)
		RRM3_hnRNPM	668..744	CDD:241105
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910