DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and AT4G27680

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_194498.1 Gene:AT4G27680 / 828882 AraportID:AT4G27680 Length:398 Species:Arabidopsis thaliana


Alignment Length:370 Identity:135/370 - (36%)
Similarity:195/370 - (52%) Gaps:48/370 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   426 FSSGRNTPPQR--SRTPINNNGPSGSGASTPVVSVKGVEQKLVQLILDEIVEGGAKVEWTDIAGQ 488
            |:..|:..|.|  |:..:.:..........|:|.....|..:.   .|.|......||:..|.|.
plant    28 FAGLRHLDPNREASKKALEHKKEISKRLGRPLVQTNPYEDVIA---CDVINPDHIDVEFGSIGGL 89

  Fly   489 DVAKQALQEMVILPSVRPELFT--GLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 551
            :..||||.|:||||..|||||.  .|..|.||:||:||||.|||:||:|:|.|..|.|:|:..::
plant    90 ETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRVSN 154

  Fly   552 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 616
            |.||:.||.:|||.|:|::|..:||:|||||||:|.|.:|.|::|||...:||||:..:||...:
plant   155 LMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVESFLGQRRSTDHEAMANMKTEFMALWDGFSTD 219

  Fly   617 PDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 681
            |.. |::||||||||.|||||.|||..:...:.:||.:.|..:|...|:.:....|.: ...:|:
plant   220 PHA-RVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILKVTLKGERVEPDID-FDHIAR 282

  Fly   682 ITDGYSGSDLTALAKDAALEPIRELNVEQVK---CLD---------------------------- 715
            :.:||:|||:..|.|.||..||||:...:.|   |||                            
plant   283 LCEGYTGSDIFELCKKAAYFPIREILDAERKGKPCLDPRPLSQLDLEKVLATSKKTQVAAGEYSL 347

  Fly   716 ---ISAMRAITEQD-FHSSLKRIRRSVAPQSLN----SYEKWSQD 752
               .||.|...|.| ..:::..|.:.:..|.:|    |.:.|.:|
plant   348 SSQSSAWRGSREPDEVQAAISGISKLLVSQIINLQSESQDSWQRD 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142
P-loop_NTPase 482..>538 CDD:304359 32/57 (56%)
AAA 515..652 CDD:214640 71/136 (52%)
AAA 519..650 CDD:278434 68/130 (52%)
Vps4_C <722..754 CDD:286426 8/36 (22%)
AT4G27680NP_194498.1 RecA-like_ATAD1 85..250 CDD:410928 88/165 (53%)
AAA_lid_3 274..310 CDD:407720 15/36 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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