DRSC/TRiP Functional Genomics Resources

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Protein Alignment spas and AtCDC48B

DIOPT Version :9

Sequence 1:NP_651206.3 Gene:spas / 42846 FlyBaseID:FBgn0039141 Length:758 Species:Drosophila melanogaster
Sequence 2:NP_190891.1 Gene:AtCDC48B / 824489 AraportID:AT3G53230 Length:815 Species:Arabidopsis thaliana


Alignment Length:617 Identity:164/617 - (26%)
Similarity:253/617 - (41%) Gaps:146/617 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 PQRFRPIQPLEMAANRPGGGY----SPGPGDPLLAKQKHHHRRAFEYISKALKIDEENEGHKELA 257
            ||.|:.|      ..:|..|.    .||.|..|:|:...:...||.:.....:|..:..|..|..
plant   231 PQLFKSI------GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESN 289

  Fly   258 IELYRKGIKELE------------DGIAVDCWSGRGDVWDRAQRLHDKMQTNLSMARDRLHFLAL 310
            :   ||..:|.|            |.||.......|:|   .:|:..::.|.:...:.|.|.:.:
plant   290 L---RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV---ERRIVSQLLTLMDGLKSRAHVIVM 348

  Fly   311 REQDLQMQRLSLKEKQKEEAQSKPQKTREPMLAGMTNEPMKL--RVRSSGYGPKATTSAQPTASG 373
                                             |.||.|..:  .:|..|...:......|...|
plant   349 ---------------------------------GATNRPNSIDPALRRFGRFDREIDIGVPDEIG 380

  Fly   374 RKLTIGSKRPVNLAVANKSQTLPRNLG----SKTSVGAVQRQPAK--TAATPPAVRRQFS----- 427
            | |.:       |.:..|:..|..::.    ||.:.|.|....|.  |.|....:|.:..     
plant   381 R-LEV-------LRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCTEAALQCIREKMDVIDLD 437

  Fly   428 ---------SGRNTPPQRSRTPINNNGPSGSGASTPVVSVKGVEQKLVQLILDEIVEGGAKVEWT 483
                     :.........:|.:.|:.||.                     |.|.|.....|.|.
plant   438 DEEIDAEILNSMAVSNDHFQTALGNSNPSA---------------------LRETVVEVPNVSWE 481

  Fly   484 DIAGQDVAKQALQEMVILPSVRPELFT--GLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLN 546
            ||.|.:..|:.|||.|..|...||.|.  |: :|:||:|.:||||.||||||:|:|.||.|.|::
plant   482 DIGGLENVKRELQETVQYPVEHPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 545

  Fly   547 ISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE---ASRRLKTEFLV 608
            |....|.:.:.|:.|..||.:|..||...|.::|.||:||:.::|.:|..:   |:.|:..:.|.
plant   546 IKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLT 610

  Fly   609 EFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPL 671
            |.||:...   ..:.::.|||||..:|.|.||  |..:.:|:.||||::|..:....|:|.....
plant   611 EMDGMNAK---KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAK 672

  Fly   672 DTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMR-------AITEQD--- 726
            |.: ||.|||.|.|:||:|:|.:.:.:....||| |:|:    ||...|       |:.|.:   
plant   673 DVD-LRALAKYTQGFSGADITEICQRSCKYAIRE-NIEK----DIEKERKRAESPEAMEEDEEEI 731

  Fly   727 -------FHSSLKRIRRSVAPQSLNSYEKWSQ 751
                   |..|:|..||||:...:..|:.::|
plant   732 AEIKAGHFEESMKYARRSVSDADIRKYQAFAQ 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spasNP_651206.3 MIT_spastin 230..308 CDD:239142 18/89 (20%)
P-loop_NTPase 482..>538 CDD:304359 29/57 (51%)
AAA 515..652 CDD:214640 55/141 (39%)
AAA 519..650 CDD:278434 51/135 (38%)
Vps4_C <722..754 CDD:286426 10/40 (25%)
AtCDC48BNP_190891.1 CDC48 30..767 CDD:273521 164/617 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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